jActiveModules is a plugin that searches a molecular interaction network to find expression activated subnetworks. Such subnetworks are connected regions of a network that show significant changes in expression over particular subsets of conditions. The method combines a rigorous statistical measure for scoring subnetworks with a search algorithm for finding subnetworks with high score.
Such expression-activated subnetworks have also been called 'network hotspots'.
For more about jActiveModules, refer to the [http://www.ncbi.nlm.nih.gov/pubmed/12169552 paper]
describing the algorithm.
For a tutorial, refer to http://opentutorials.cgl.ucsf.edu/index.php/Tutorial:JActiveModules_3
For Help, refer to https://github.com/idekerlab/jActiveModules/wiki/Help
For Tips & Tricks, refer to [https://github.com/idekerlab/jActiveModules/wiki/Tips-and-Tricks].
For Known Issues, refer to [https://github.com/idekerlab/jActiveModules/wiki/Known-Issues].