jActiveModules

Finds clusters where member nodes show significant changes in expression levels.
jActiveModules is a plugin that searches a molecular interaction network to find expression activated subnetworks. Such subnetworks are connected regions of a network that show significant changes in expression over particular subsets of conditions. The method combines a rigorous statistical measure for scoring subnetworks with a search algorithm for finding subnetworks with high score. Such expression-activated subnetworks have also been called 'network hotspots'. For more about jActiveModules, refer to the [http://www.ncbi.nlm.nih.gov/pubmed/12169552 paper] describing the algorithm. For a tutorial, refer to http://opentutorials.cgl.ucsf.edu/index.php/Tutorial:JActiveModules_3 For Help, refer to https://github.com/idekerlab/jActiveModules/wiki/Help For Tips & Tricks, refer to [https://github.com/idekerlab/jActiveModules/wiki/Tips-and-Tricks]. For Known Issues, refer to [https://github.com/idekerlab/jActiveModules/wiki/Known-Issues].

3.2.1

Works with Cytoscape 3.0

Apps that depend on this release


3.2

Works with Cytoscape 3.0

Apps that depend on this release


3.1

Works with Cytoscape 3.0


3.0

Works with Cytoscape 3.0


1.8

Works with Cytoscape 3.0


1.7

Works with Cytoscape 3.0


1.6

Works with Cytoscape 3.0


1.5

Works with Cytoscape 3.0

Apps that depend on this release


1.2

Works with Cytoscape 4.0


1.0

Works with Cytoscape 3.0


CYTOSCAPE 3

Version 3.2.1

Released 16 Jun 2016

Works with Cytoscape 3.0

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CYTOSCAPE 2

Version 2.23

Released 13 Aug 2008

Works with Cytoscape 2.5, 2.6

Download Stats Click here