Functional Enrichment Collection

Collection of apps to facilitate functional enrichment analysis. By installing this app, you will be installing a set of apps.
This collection of apps has been made to facilitate functional enrichment analysis. By installing this app, you are installing the following set of apps that work well together in workflows like this: ### Generate a Network Starting with a gene list based on your omics experiment, for example, you can gather interaction data using the following apps in this collection to generate a network: - **STRING app** - **GeneMANIA** - **AgilentLiteratureSearch** ### Integrate Your Data - Import your omics data into Cytoscape - Use built-in ID mapping via right-click on column header (if needed) ### Perform Functional Enrichment Analyses - **BiNGO** - **EnrichmentMap** - **ENViz** ### Resources to Help with Functional Interpretation - **WikiPathways** and **ReactomeFI** for pathway models - **CyTargetLinker** for adding miRNA, TF and drug interactions - **CyAnimator** to animate across time points or comparisons (if relevant) --- ***Refer to the documentation and app store pages for each individual app for more details***

2.0

Works with Cytoscape 3.3


1.0

Works with Cytoscape 3.3


CYTOSCAPE 3

Version 2.0

Released 3 May 2017

Works with Cytoscape 3.3

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