idare.subnetwork.internal

Class SubNetworkUtils

java.lang.Object

idare.subnetwork.internal.SubNetworkUtils

public class SubNetworkUtils
extends Object

Constructor Summary

Constructors

Constructor and Description
SubNetworkUtils()

Method Summary

Modifier and Type	Method and Description
static Vector<Object>	getDifferentSubSystems(org.cytoscape.model.CyTable table, String ColName) Get a Vector of SubSystem Identifiers from the given CyTable and the given Column name (i.e.
static Vector<String>	getNodeTableColumnNames(org.cytoscape.model.CyNetwork network) Get all Columns present in the node Table of the provided network
static boolean	isempty(org.cytoscape.model.CyRow row, String ColName) Check whether the entry of Column ColName in CyRow row is empty.
static boolean	isempty(Object Entry) Check whether a given Object is either empty or an empty String
static void	setupNetworkForSubNetworkCreation(org.cytoscape.model.CyNetwork network, IDARESettingsManager Idmgr, String NodeTypeCol) Set up the Network for SubNetwork Generation, i.e.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SubNetworkUtils

public SubNetworkUtils()

Method Detail

getNodeTableColumnNames

public static Vector<String> getNodeTableColumnNames(org.cytoscape.model.CyNetwork network)

Get all Columns present in the node Table of the provided network

Parameters:

network - The network to get the Column names for.

Returns:

a Vector containing all the Column names of the network.

setupNetworkForSubNetworkCreation

public static void setupNetworkForSubNetworkCreation(org.cytoscape.model.CyNetwork network,
                                                     IDARESettingsManager Idmgr,
                                                     String NodeTypeCol)

Set up the Network for SubNetwork Generation, i.e. set the subnetwork Type column to the values translated from the specified NodeTypeColumn.

Parameters:

network - - the network to set up

Idmgr - - the ID Manager

NodeTypeCol - - The NodeType Column name

getDifferentSubSystems

public static Vector<Object> getDifferentSubSystems(org.cytoscape.model.CyTable table,
                                                    String ColName)

Get a Vector of SubSystem Identifiers from the given CyTable and the given Column name (i.e. all different entries in that column)

Parameters:

table - - The table to look up

ColName - - The String identifying the Column to look up the different subsystem identifiers

Returns:

a Vector of column Identifiers

isempty

public static boolean isempty(org.cytoscape.model.CyRow row,
                              String ColName)

Check whether the entry of Column ColName in CyRow row is empty. I.e. it is either null or its string representation is an empty string.

Parameters:

row - - The row in question

ColName - - the Column to check.

Returns:

Whether the column is empty in the given row

isempty

public static boolean isempty(Object Entry)

Check whether a given Object is either empty or an empty String

Parameters:

Entry - The Entry to check (whether its null or an empty string)

Returns:

Whether the entry is empty or represented by an empty string