| Modifier and Type | Method and Description | 
|---|---|
DataSetManager | 
IDAREImageNodeApp.getDatasetManager()
Get the  
DataSetManager created by this App | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
NodeManager.setDataSetManager(DataSetManager dsm)
Set the DatasetManager used by this  
NodeManager. | 
| Modifier and Type | Method and Description | 
|---|---|
DataSetManager | 
DataSetChangedEvent.getSource()
Get the  
DataSetManager this event originates from. | 
DataSetManager | 
DataSetsChangedEvent.getSource()
Get the  
DataSetManager this event originates from. | 
| Constructor and Description | 
|---|
DataSetChangedEvent(DataSetManager source,
                   DataSet setchanged,
                   boolean added,
                   boolean removed,
                   boolean changed)
Create a New Event with the changing set, the  
DataSetManager this event originates from and an indicator whether the set is added or removed. | 
DataSetsChangedEvent(DataSetManager source,
                    Collection<DataSet> setschanged,
                    boolean added,
                    boolean removed,
                    boolean changed)
Create a New Event with the changing sets, the  
DataSetManager this event originates from and an indicator whether the sets are added or removed. | 
| Constructor and Description | 
|---|
DataSetParametersGUIHandler(Field field,
                           Object instance,
                           org.cytoscape.work.Tunable tunable,
                           org.cytoscape.util.swing.FileUtil util,
                           DataSetManager dsm,
                           org.cytoscape.application.swing.CySwingApplication cySwingApp)  | 
DataSetParametersGUIHandler(Method getter,
                           Method setter,
                           Object instance,
                           org.cytoscape.work.Tunable tunable,
                           org.cytoscape.util.swing.FileUtil util,
                           DataSetManager dsm,
                           org.cytoscape.application.swing.CySwingApplication cySwingApp)  | 
DataSetParametersGUIHandlerFactory(org.cytoscape.util.swing.FileUtil util,
                                  DataSetManager dsm,
                                  org.cytoscape.application.swing.CySwingApplication cySwingApp)  | 
TunableDataSetAdderGUI(DataSetManager dsm,
                      org.cytoscape.util.swing.FileUtil util,
                      org.cytoscape.application.swing.CySwingApplication cySwingApp)  | 
| Modifier and Type | Method and Description | 
|---|---|
DataSetManager | 
DataSetReadingInfo.getDataSetManager()  | 
| Constructor and Description | 
|---|
DataSetAdderTask(DataSetManager dsm)  | 
DataSetAdderTaskFactory(DataSetManager dsm,
                       org.cytoscape.work.swing.DialogTaskManager dtm,
                       org.cytoscape.application.swing.CySwingApplication cySwingApp)  | 
DataSetReadingInfo(DataSetManager dsm,
                  DataSetGenerationParameters params)  | 
| Constructor and Description | 
|---|
DataSetSelectionModel(DataSetManager dsm)
Create a new  
DataSetSelectionModel by providing the DataSetManager, which is used to build the model on. | 
| Modifier and Type | Method and Description | 
|---|---|
boolean | 
ImageNodeLayout.readLayout(DataSetManager dsm,
          ObjectInputStream os,
          Object currentobject)
Read a layout object from an  
ObjectInputStream given the last object read (which is the first object of the layout) | 
| Modifier and Type | Method and Description | 
|---|---|
boolean | 
AutomaticNodeLayout.readLayout(DataSetManager dsm,
          ObjectInputStream os,
          Object currentobject)  | 
| Modifier and Type | Method and Description | 
|---|---|
ImageNodeLayout | 
LayoutIOManager.readLayout(ObjectInputStream os,
          Object currentobject,
          DataSetManager dsm)
Read a Layout from a stream 
 | 
| Modifier and Type | Method and Description | 
|---|---|
static void | 
LayoutGUI.createAndShowGUI(DataSetSelectionModel dssm,
                DataSetManager dsm,
                IDAREImageNodeApp app,
                CreateNodesTaskFactory nodeFactory)
Build the gui 
 | 
boolean | 
ManualNodeLayout.readLayout(DataSetManager dsm,
          ObjectInputStream os,
          Object currentobject)  | 
boolean | 
ManualLayout.readLayout(DataSetManager dsm,
          ObjectInputStream os,
          Object currentobject)  | 
| Constructor and Description | 
|---|
LayoutGUI(DataSetManager dsm,
         IDAREImageNodeApp app,
         CreateNodesTaskFactory nodeFactory)  | 
| Constructor and Description | 
|---|
LayoutPropertiesGUI(DataSetManager dsm)
Generate the Requesting fields using the given dataset 
 | 
LayoutPropertiesGUIHandler(Field field,
                          Object instance,
                          org.cytoscape.work.Tunable tunable,
                          DataSetManager dsm)  | 
LayoutPropertiesGUIHandler(Method getter,
                          Method setter,
                          Object instance,
                          org.cytoscape.work.Tunable tunable,
                          DataSetManager dsm)  | 
NetworkSetupGUIHandlerFactory(DataSetManager dsm,
                             IDARESettingsManager idmgr,
                             org.cytoscape.application.CyApplicationManager appmgr)  | 
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