Uses of Class
idare.imagenode.Interfaces.DataSets.DataSet

Packages that use DataSet

Package	Description
idare.imagenode.Data.BasicDataTypes.ArrayData	This package contains the basic Dataset assuming that the data consists of one sheet of information.
idare.imagenode.Data.BasicDataTypes.MultiArrayData	This package contains the a Dataset specification for datasets with multiple sheets of containing multiple related sets of information..
idare.imagenode.Interfaces.DataSets	A Package that defines interfaces and abstract basis classes for all components necessary to represent a DataSet.
idare.imagenode.Interfaces.Layout	A Package that defines interfaces and abstract basis classes for all components necessary to generate a Layout for n individual DataSet
idare.imagenode.internal
idare.imagenode.internal.Data.Array.CircleData
idare.imagenode.internal.Data.Array.CircleGridData
idare.imagenode.internal.Data.Array.RectangleData
idare.imagenode.internal.Data.Array.TimeSeriesData
idare.imagenode.internal.Data.MultiArray.GraphData
idare.imagenode.internal.Data.MultiArray.IndividualGraph
idare.imagenode.internal.Data.MultiArray.ScatterData
idare.imagenode.internal.DataManagement
idare.imagenode.internal.DataManagement.Events
idare.imagenode.internal.GUI.DataSetController
idare.imagenode.internal.Layout
idare.imagenode.internal.Layout.Automatic
idare.imagenode.internal.Layout.Manual.GUI

Uses of DataSet in idare.imagenode.Data.BasicDataTypes.ArrayData

Subclasses of DataSet in idare.imagenode.Data.BasicDataTypes.ArrayData

Modifier and Type	Class and Description
class	ArrayDataSet An Abstract basis class for item based datasets.

Fields in idare.imagenode.Data.BasicDataTypes.ArrayData declared as DataSet

Modifier and Type	Field and Description
protected DataSet	AbstractArrayContainer.origin

Methods in idare.imagenode.Data.BasicDataTypes.ArrayData that return DataSet

Modifier and Type	Method and Description
DataSet	AbstractArrayContainer.getDataSet()

Methods in idare.imagenode.Data.BasicDataTypes.ArrayData that return types with arguments of type DataSet

Modifier and Type	Method and Description
Collection<Class<? extends DataSet>>	AbstractArrayDataSetProperties.getWorkingClassTypes()

Methods in idare.imagenode.Data.BasicDataTypes.ArrayData with parameters of type DataSet

Modifier and Type	Method and Description
JPanel	AbstractArrayDataSetProperties.getDataSetDescriptionPane(JScrollPane Legend, String DataSetLabel, ColorMap map, DataSet set)
void	AbstractArrayDataSetProperties.testValidity(DataSet set)

Constructors in idare.imagenode.Data.BasicDataTypes.ArrayData with parameters of type DataSet

Constructor and Description
AbstractArrayContainer(DataSet origin, NodeData data) Basic constructor with a source DataSet and the data used in this container.
ArrayNodeData(DataSet origin) Basic constructor using the dataset this is originating from

Uses of DataSet in idare.imagenode.Data.BasicDataTypes.MultiArrayData

Subclasses of DataSet in idare.imagenode.Data.BasicDataTypes.MultiArrayData

Modifier and Type	Class and Description
class	MultiArrayDataSet Class to provide a basic setting for MultiArray Datasets.

Fields in idare.imagenode.Data.BasicDataTypes.MultiArrayData declared as DataSet

Modifier and Type	Field and Description
protected DataSet	MultiArrayContainer.origin The DataSet this container is associated with

Methods in idare.imagenode.Data.BasicDataTypes.MultiArrayData that return DataSet

Modifier and Type	Method and Description
DataSet	MultiArrayContainer.getDataSet()

Methods in idare.imagenode.Data.BasicDataTypes.MultiArrayData with parameters of type DataSet

Modifier and Type	Method and Description
void	MultiArrayDescription.setupItemDescription(DataSet currentdata, ColorMap map) Set up the data description using a specific ColorMap to obtain the line colors and the respective DataSet to obtain the Line names.

Constructors in idare.imagenode.Data.BasicDataTypes.MultiArrayData with parameters of type DataSet

Constructor and Description
MultiArrayContainer(DataSet origin, NodeData data) Standard Constructor using the Source Dataset and a NodeData
MultiArrayNodeData(DataSet origin) Basic constructor providing a source DataSet

Uses of DataSet in idare.imagenode.Interfaces.DataSets

Fields in idare.imagenode.Interfaces.DataSets declared as DataSet

Modifier and Type	Field and Description
protected DataSet	NodeData.parent

Methods in idare.imagenode.Interfaces.DataSets that return DataSet

Modifier and Type	Method and Description
DataSet	DataContainer.getDataSet() Get the source Dataset this Container was build from.
DataSet	NodeData.getDataSet() Get the originating DataSet this NodeData belongs to.

Constructors in idare.imagenode.Interfaces.DataSets with parameters of type DataSet

Constructor and Description
NodeData(DataSet origin) Generic contstructor using the source DataSet.

Uses of DataSet in idare.imagenode.Interfaces.Layout

Methods in idare.imagenode.Interfaces.Layout that return types with arguments of type DataSet

Modifier and Type	Method and Description
abstract Collection<Class<? extends DataSet>>	DataSetLayoutProperties.getWorkingClassTypes() Get the DataSet class Types these Properties are supposed to work with.

Methods in idare.imagenode.Interfaces.Layout with parameters of type DataSet

Modifier and Type	Method and Description
abstract JPanel	DataSetLayoutProperties.getDataSetDescriptionPane(JScrollPane Legend, String DataSetLabel, ColorMap map, DataSet set) Plot the Legend for this Dataset.
abstract DataContainer	DataSetLayoutProperties.newContainerInstance(DataSet origin, NodeData data) Create a new Container for a specific DataSet and a given NodeData.
abstract void	DataSetLayoutProperties.testValidity(DataSet set) Test, whether the provided DataSet is valid to be used with these properties.

Uses of DataSet in idare.imagenode.internal

Methods in idare.imagenode.internal with parameters of type DataSet

Modifier and Type	Method and Description
void	IDAREImageNodeApp.deregisterDataSetType(DataSet ds) Deregister a the an available DataSet class based on an instance of the class.
void	IDAREImageNodeApp.registerDataSetType(DataSet ds) Register a the type of a dataset provided to the set of avilable DataSet classes

Method parameters in idare.imagenode.internal with type arguments of type DataSet

Modifier and Type	Method and Description
void	IDAREImageNodeApp.deRegisterDataSetProperties(Class<? extends DataSet> dataSetClass, DataSetLayoutProperties props) Deregister DataSetProperties from a DataSet of the given Type.
Collection<DataSetLayoutProperties>	IDAREImageNodeApp.registerDataSetProperties(Class<? extends DataSet> dataSetClass, Collection<DataSetLayoutProperties> props) Register DataSetProperties for a DataSet of the given Type.
boolean	IDAREImageNodeApp.registerDataSetProperties(Class<? extends DataSet> dataSetClass, DataSetLayoutProperties props) Register DataSetProperties for a DataSet of the given Type.

Uses of DataSet in idare.imagenode.internal.Data.Array.CircleData

Methods in idare.imagenode.internal.Data.Array.CircleData with parameters of type DataSet

Modifier and Type	Method and Description
DataContainer	CircleDataSetProperties.newContainerInstance(DataSet origin, NodeData data)

Constructors in idare.imagenode.internal.Data.Array.CircleData with parameters of type DataSet

Constructor and Description
CircleContainer(DataSet origin, ArrayNodeData data) Basic Constructor using the source dataset and an instance of the data.

Uses of DataSet in idare.imagenode.internal.Data.Array.CircleGridData

Methods in idare.imagenode.internal.Data.Array.CircleGridData with parameters of type DataSet

Modifier and Type	Method and Description
DataContainer	CircleGridProperties.newContainerInstance(DataSet origin, NodeData data)
void	CircleGridProperties.testValidity(DataSet set)

Uses of DataSet in idare.imagenode.internal.Data.Array.RectangleData

Methods in idare.imagenode.internal.Data.Array.RectangleData with parameters of type DataSet

Modifier and Type	Method and Description
DataContainer	RectangleDataSetProperties.newContainerInstance(DataSet origin, NodeData data)

Constructors in idare.imagenode.internal.Data.Array.RectangleData with parameters of type DataSet

Constructor and Description
RectangleContainer(DataSet origin, ArrayNodeData data)

Uses of DataSet in idare.imagenode.internal.Data.Array.TimeSeriesData

Methods in idare.imagenode.internal.Data.Array.TimeSeriesData with parameters of type DataSet

Modifier and Type	Method and Description
DataContainer	TimeSeriesDataSetProperties.newContainerInstance(DataSet origin, NodeData data)
void	TimeSeriesDataSetProperties.testValidity(DataSet set)

Uses of DataSet in idare.imagenode.internal.Data.MultiArray.GraphData

Methods in idare.imagenode.internal.Data.MultiArray.GraphData that return types with arguments of type DataSet

Modifier and Type	Method and Description
Collection<Class<? extends DataSet>>	GraphDataSetProperties.getWorkingClassTypes()

Methods in idare.imagenode.internal.Data.MultiArray.GraphData with parameters of type DataSet

Modifier and Type	Method and Description
JPanel	GraphDataSetProperties.getDataSetDescriptionPane(JScrollPane Legend, String DataSetLabel, ColorMap map, DataSet set)
DataContainer	GraphDataSetProperties.newContainerInstance(DataSet origin, NodeData data)
void	GraphDataSetProperties.testValidity(DataSet set)

Constructors in idare.imagenode.internal.Data.MultiArray.GraphData with parameters of type DataSet

Constructor and Description
GraphContainer(DataSet origin, NodeData data)

Uses of DataSet in idare.imagenode.internal.Data.MultiArray.IndividualGraph

Methods in idare.imagenode.internal.Data.MultiArray.IndividualGraph that return types with arguments of type DataSet

Modifier and Type	Method and Description
Collection<Class<? extends DataSet>>	IndividualGraphDataSetProperties.getWorkingClassTypes()

Methods in idare.imagenode.internal.Data.MultiArray.IndividualGraph with parameters of type DataSet

Modifier and Type	Method and Description
JPanel	IndividualGraphDataSetProperties.getDataSetDescriptionPane(JScrollPane Legend, String DataSetLabel, ColorMap map, DataSet set)
DataContainer	IndividualGraphDataSetProperties.newContainerInstance(DataSet origin, NodeData data)
void	IndividualGraphDataSetProperties.testValidity(DataSet set)

Constructors in idare.imagenode.internal.Data.MultiArray.IndividualGraph with parameters of type DataSet

Constructor and Description
IndividualGraphContainer(DataSet origin, NodeData data)

Uses of DataSet in idare.imagenode.internal.Data.MultiArray.ScatterData

Methods in idare.imagenode.internal.Data.MultiArray.ScatterData that return types with arguments of type DataSet

Modifier and Type	Method and Description
Collection<Class<? extends DataSet>>	ScatterDataSetProperties.getWorkingClassTypes()

Methods in idare.imagenode.internal.Data.MultiArray.ScatterData with parameters of type DataSet

Modifier and Type	Method and Description
JPanel	ScatterDataSetProperties.getDataSetDescriptionPane(JScrollPane Legend, String DataSetLabel, ColorMap map, DataSet set)
DataContainer	ScatterDataSetProperties.newContainerInstance(DataSet origin, NodeData data)
void	ScatterDataSetProperties.testValidity(DataSet set)

Constructors in idare.imagenode.internal.Data.MultiArray.ScatterData with parameters of type DataSet

Constructor and Description
ScatterContainer(DataSet origin, NodeData data, int labelsize)

Uses of DataSet in idare.imagenode.internal.DataManagement

Methods in idare.imagenode.internal.DataManagement that return DataSet

Modifier and Type	Method and Description
DataSet	DataSetManager.createDataSet(boolean TwoCols, String DataSetTypeName, String SetDescription, IDAREWorkbook dsWorkBook) Create a Dataset based on properties and a DataSetFile.
static DataSet	DataSetFactory.getDataSet(String DataSetClass) Generate a new instance for a class of a specific classname.
DataSet	DataSetManager.getDataSetForID(Integer id) Get the dataset with the specified ID from this manager.

Methods in idare.imagenode.internal.DataManagement that return types with arguments of type DataSet

Modifier and Type	Method and Description
Collection<DataSet>	DataSetManager.getDataSets()

Methods in idare.imagenode.internal.DataManagement with parameters of type DataSet

Modifier and Type	Method and Description
void	ImageNodeModel.addData(DataSet newData) Add a DataSet to this node.
void	DataSetManager.addDataSet(DataSet newDataSet) Add a Dataset to this Manager.
void	ImageNodeModel.removeData(DataSet oldData) Remove a DataSet from this node
void	DataSetManager.removeDataSet(DataSet setToRemove) Remove a DataSet from this Manager
void	NodeManager.update(DataSet ds, boolean added) Update the Manager/Nodes with the new DataSet, either adding it or removing it form the nodes.

Method parameters in idare.imagenode.internal.DataManagement with type arguments of type DataSet

Modifier and Type	Method and Description
void	DataSetManager.deRegisterDataSetType(String TypeName, Class<? extends DataSet> dataSetClass) Remove a class from the available Datasetclasses.
void	DataSetManager.deregisterPropertiesForDataSet(Class<? extends DataSet> classType, DataSetLayoutProperties properties) Deregister Properties for a DataSet
void	NodeManager.generateLayoutsForNodes(Set<DataSet> datasets, ImageNodeLayout layout) Generate Layouts for All nodes in the DataSets present in the DataSetLayoutInfoBundles provided.
void	NodeManager.generateLayoutsForNodes(Set<DataSet> datasets, ImageNodeLayout layout, org.cytoscape.work.TaskMonitor monitor) Generate Layouts for All nodes in the DataSets present in the DataSetLayoutInfoBundles provided.
void	DataSetManager.registerDataSetType(String TypeName, Class<? extends DataSet> dataSetClass) Register a DataSetType that can be accessed by the TypeName.
Collection<DataSetLayoutProperties>	DataSetManager.registerPropertiesForDataSet(Class<? extends DataSet> classType, Collection<DataSetLayoutProperties> properties) Register a set of properties for a datasetclass.
boolean	DataSetManager.registerPropertiesForDataSet(Class<? extends DataSet> classType, DataSetLayoutProperties properties) Add DataSetProperties for a specific dataset

Uses of DataSet in idare.imagenode.internal.DataManagement.Events

Methods in idare.imagenode.internal.DataManagement.Events that return DataSet

Modifier and Type	Method and Description
DataSet	DataSetChangedEvent.getSet() Get the DataSet that is changing

Methods in idare.imagenode.internal.DataManagement.Events that return types with arguments of type DataSet

Modifier and Type	Method and Description
Collection<DataSet>	DataSetsChangedEvent.getSet() Get the Collection of datasets that are changing.

Constructors in idare.imagenode.internal.DataManagement.Events with parameters of type DataSet

Constructor and Description
DataSetChangedEvent(DataSetManager source, DataSet setchanged, boolean added, boolean removed, boolean changed) Create a New Event with the changing set, the DataSetManager this event originates from and an indicator whether the set is added or removed.

Constructor parameters in idare.imagenode.internal.DataManagement.Events with type arguments of type DataSet

Constructor and Description
DataSetsChangedEvent(DataSetManager source, Collection<DataSet> setschanged, boolean added, boolean removed, boolean changed) Create a New Event with the changing sets, the DataSetManager this event originates from and an indicator whether the sets are added or removed.

Uses of DataSet in idare.imagenode.internal.GUI.DataSetController

Methods in idare.imagenode.internal.GUI.DataSetController with parameters of type DataSet

Modifier and Type	Method and Description
void	DataSetSelectionModel.updateDataSetProperties(DataSet ds) Update the dataset Properties

Method parameters in idare.imagenode.internal.GUI.DataSetController with type arguments of type DataSet

Modifier and Type	Method and Description
void	CreateNodesTaskFactory.run(Set<DataSet> DataSetsToLayout, ImageNodeLayout layout) Run the task factory.

Uses of DataSet in idare.imagenode.internal.Layout

Fields in idare.imagenode.internal.Layout declared as DataSet

Modifier and Type	Field and Description
DataSet	DataSetLayoutInfoBundle.dataset
DataSet	SimpleLink.ds

Methods in idare.imagenode.internal.Layout that return DataSet

Modifier and Type	Method and Description
DataSet	DataSetLink.getDataSet() Get the DataSet this link refers to
DataSet	DataSetLayoutInfoBundle.getDataSet()
DataSet	SimpleLink.getDataSet()

Constructors in idare.imagenode.internal.Layout with parameters of type DataSet

Constructor and Description
SimpleLink(DataSet ds, int position)

Uses of DataSet in idare.imagenode.internal.Layout.Automatic

Methods in idare.imagenode.internal.Layout.Automatic with parameters of type DataSet

Modifier and Type	Method and Description
ContainerLayout	AutomaticNodeLayout.getLayoutContainerUsedFor(DataSet set) Get the Container used for the provided dataset
void	ImageNodeContainer.removeDataSet(DataSet set) Remove a DataSet from this layout container.

Uses of DataSet in idare.imagenode.internal.Layout.Manual.GUI

Constructors in idare.imagenode.internal.Layout.Manual.GUI with parameters of type DataSet

Constructor and Description
DatasetMenu(DataSet set, LayoutGUI gui)