idare.imagenode.Interfaces.DataSetReaders

Class IDAREReaderSetupTask

java.lang.Object

idare.imagenode.Interfaces.DataSetReaders.IDAREReaderSetupTask

All Implemented Interfaces:

org.cytoscape.work.Task

public abstract class IDAREReaderSetupTask
extends Object
implements org.cytoscape.work.Task

An Abstract Basis Class that defines a Task that is necessary to set up a reader for dataset parsing. The reader can use this Task to obtain a set of Tunables that can be defined in this Task if the corresponding TunableHandler is defined. This Task should NOT add additional Tasks

Author:

Thomas Pfau

Constructor Summary

Constructors

Constructor and Description
IDAREReaderSetupTask(IDAREDatasetReader reader) Default constructor using the reader this Task is supposed to set up.

Method Summary

Modifier and Type	Method and Description
void	cancel()
abstract void	execute(org.cytoscape.work.TaskMonitor taskMonitor) Execute the Task.
void	run(org.cytoscape.work.TaskMonitor taskMonitor) Runs the Task specified by the execute method and catches any exception, converting the exception into a status message.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

IDAREReaderSetupTask

public IDAREReaderSetupTask(IDAREDatasetReader reader)

Default constructor using the reader this Task is supposed to set up.

Parameters:

reader - the DataSetReader to use

Method Detail

execute

public abstract void execute(org.cytoscape.work.TaskMonitor taskMonitor)
                      throws Exception

Execute the Task.

Parameters:

taskMonitor - the TaskMonitor this Task can use.

Throws:

Exception - Multiple Exceptions passed on from Cytoscape

run

public final void run(org.cytoscape.work.TaskMonitor taskMonitor)
               throws Exception

Runs the Task specified by the execute method and catches any exception, converting the exception into a status message. Also updates the statusMessage to indicate the reader is ready if the Task completes without errors.

Specified by:

run in interface org.cytoscape.work.Task

Throws:

Exception

cancel

public void cancel()

Specified by:

cancel in interface org.cytoscape.work.Task