Uses of Class
es.imim.DISGENET.gui.GuiParameters

Packages that use GuiParameters

Package	Description
es.imim.DISGENET.database
es.imim.DISGENET.gui
es.imim.DISGENET.internal.automation
es.imim.DISGENET.internal.tables
es.imim.DISGENET.network

Uses of GuiParameters in es.imim.DISGENET.database

Methods in es.imim.DISGENET.database with parameters of type GuiParameters

Modifier and Type	Method and Description
HashMap<String,HashMap<String,String>>	Database.getDiseaseAttributes(GuiParameters curParams)
HashMap<String,HashMap<String,String>>	DatabaseImpl.getDiseaseAttributes(GuiParameters curParams)
ArrayList<String>	Database.getDiseaseList(GuiParameters curParams)
ArrayList<String>	DatabaseImpl.getDiseaseList(GuiParameters curParams) Case in gene-dis panel
ArrayList<String>	Database.getDiseaseListVariant(GuiParameters params)
ArrayList<String>	DatabaseImpl.getDiseaseListVariant(GuiParameters curParams) Case in var-dis panel
HashMap<String,ArrayList<String>>	Database.getDiseaseProjectionBySrc(GuiParameters curParams)
HashMap<String,ArrayList<String>>	DatabaseImpl.getDiseaseProjectionBySrc(GuiParameters curParams)
ArrayList<String>	Database.getDiseasesAssociatedToGenes(GuiParameters curParams)
ArrayList<String>	DatabaseImpl.getDiseasesAssociatedToGenes(GuiParameters curParams)
HashMap<String,HashMap<String,String>>	Database.getGeneAttributes(GuiParameters curParams)
HashMap<String,HashMap<String,String>>	DatabaseImpl.getGeneAttributes(GuiParameters curParams)
HashMap<String,ArrayList<String>>	Database.getGeneDiseaseNetworkBySrc(GuiParameters curParams)
HashMap<String,ArrayList<String>>	DatabaseImpl.getGeneDiseaseNetworkBySrc(GuiParameters curParams)
ArrayList<String>	Database.getGeneIdList(GuiParameters params)
ArrayList<String>	DatabaseImpl.getGeneIdList(GuiParameters curParams) Case in gen-dis panel
ArrayList<String>	Database.getGeneList(GuiParameters curParams)
ArrayList<String>	DatabaseImpl.getGeneList(GuiParameters curParams) Case in gene-dis panel
ArrayList<String>	Database.getGeneListVariant(GuiParameters params)
ArrayList<String>	DatabaseImpl.getGeneListVariant(GuiParameters curParams) Case in var-dis panel
HashMap<String,ArrayList<String>>	Database.getGeneProjectionBySrc(GuiParameters curParams)
HashMap<String,ArrayList<String>>	DatabaseImpl.getGeneProjectionBySrc(GuiParameters curParams)
HashMap<String,HashMap<String,String>>	DatabaseImpl.getVariantAttributes(GuiParameters curParams)
HashMap<String,ArrayList<String>>	Database.getVariantDiseaseNetworkBySrc(GuiParameters curParams)
HashMap<String,ArrayList<String>>	DatabaseImpl.getVariantDiseaseNetworkBySrc(GuiParameters curParams)
ArrayList<String>	Database.getVariantList(GuiParameters curParams)
ArrayList<String>	DatabaseImpl.getVariantList(GuiParameters curParams) Case in var-dis panel

Uses of GuiParameters in es.imim.DISGENET.gui

Methods in es.imim.DISGENET.gui that return GuiParameters

Modifier and Type	Method and Description
GuiParameters<Object,Object>	MainPanel.getParams()

Methods in es.imim.DISGENET.gui with parameters of type GuiParameters

Modifier and Type	Method and Description
void	MainPanel.setParams(GuiParameters<Object,Object> params)

Uses of GuiParameters in es.imim.DISGENET.internal.automation

Constructors in es.imim.DISGENET.internal.automation with parameters of type GuiParameters

Constructor and Description
NetTaskAutomation(GuiParameters curParams)

Uses of GuiParameters in es.imim.DISGENET.internal.tables

Methods in es.imim.DISGENET.internal.tables that return GuiParameters

Modifier and Type	Method and Description
GuiParameters	DisGeNetCyTableDisease.getParams()
GuiParameters	DisGeNetCyTableGene.getParams()
GuiParameters	DisGeNetCyTableVariant.getParams()

Methods in es.imim.DISGENET.internal.tables with parameters of type GuiParameters

Modifier and Type	Method and Description
void	DisGeNetCyTableDisease.setParams(GuiParameters params)
void	DisGeNetCyTableGene.setParams(GuiParameters params)
void	DisGeNetCyTableVariant.setParams(GuiParameters params)

Constructors in es.imim.DISGENET.internal.tables with parameters of type GuiParameters

Constructor and Description
DisGeNetCyTableBase(GuiParameters params)
DisGeNetCyTableDisease(GuiParameters params)
DisGeNetCyTableGene(GuiParameters params)
DisGeNetCyTableVariant(GuiParameters params)

Uses of GuiParameters in es.imim.DISGENET.network

Methods in es.imim.DISGENET.network that return GuiParameters

Modifier and Type	Method and Description
GuiParameters	NetTask.getCurParams()

Methods in es.imim.DISGENET.network with parameters of type GuiParameters

Modifier and Type	Method and Description
void	NetworkBuilder.buildDiseaseNet(GuiParameters curParams) Generic function to create disease network
void	NetworkBuilder.buildGeneDiseaseNet(GuiParameters curParams) Get the gene/disease net information from the database and call generic function to build net
void	NetworkBuilder.buildGeneNet(GuiParameters curParams) Generic function to create gene network
void	NetworkBuilder.buildNet(List<String> list1, List<String> list2, List<String> nrCommonEntities, String src, GuiParameters params) Builds a new disease-disease or gene-gene network.
void	NetworkBuilder.buildNetWithEdgeAttributes(ArrayList<String> intList, ArrayList<String> disList, ArrayList<String> genList, ArrayList<String> scoreList, ArrayList<String> eiList, ArrayList<String> yearList, ArrayList<String> yearFinalList, GuiParameters params)
void	NetworkBuilder.buildVariantDiseaseNet(GuiParameters curParams) Get the variant/disease net information from the database and call generic function to build net
Map<String,Long>	NetworkBuilder.expandGeneDiseaseNet(GuiParameters curParams, Map<String,Long> nodeMap) Expands the selected gene disease network using the selected nodes as reference.
Map<String,Long>	NetworkBuilder.expandVariantDiseaseNet(GuiParameters curParams, Map<String,Long> nodeMap) Expands the selected variant disease network using the selected nodes as reference.
void	NetworkBuilder.initAdditionalStyleAttributes(GuiParameters<?,?> params) Fills the attribute columns for the different type of networks.
void	NetTask.setCurParams(GuiParameters curParams)

Constructors in es.imim.DISGENET.network with parameters of type GuiParameters

Constructor and Description
NetAction(GuiParameters curParams)
NetAction(GuiParameters curParams, JTabbedPane pane)
NetTask(GuiParameters curParams)
NetworkBuilder(GuiParameters params)