es.imim.DISGENET.database

Interface Database

All Superinterfaces:

Remote, Serializable

All Known Implementing Classes:

DatabaseImpl

public interface Database
extends Remote, Serializable

Method Summary

Modifier and Type	Method and Description
Map<String,String>	getAssociatedGenesToVariants(List<String> genes)
HashMap<String,HashMap<String,String>>	getDiseaseAttributes(GuiParameters curParams)
ArrayList<String>	getDiseaseList(GuiParameters curParams)
ArrayList<String>	getDiseaseListVariant(GuiParameters params)
HashMap<String,ArrayList<String>>	getDiseaseProjectionBySrc(GuiParameters curParams)
ArrayList<String>	getDiseasesAssociatedToGenes(GuiParameters curParams)
HashMap<String,HashMap<String,String>>	getGeneAttributes(GuiParameters curParams)
HashMap<String,ArrayList<String>>	getGeneDiseaseNetworkBySrc(GuiParameters curParams)
String	getGeneId(String geneName)
ArrayList<String>	getGeneIdList(GuiParameters params)
ArrayList<String>	getGeneList(GuiParameters curParams)
ArrayList<String>	getGeneListVariant(GuiParameters params)
HashMap<String,ArrayList<String>>	getGeneProjectionBySrc(GuiParameters curParams)
HashMap<String,ArrayList<String>>	getVariantDiseaseNetworkBySrc(GuiParameters curParams)
ArrayList<String>	getVariantList(GuiParameters curParams)

Method Detail

getGeneId

String getGeneId(String geneName)

getGeneAttributes

HashMap<String,HashMap<String,String>> getGeneAttributes(GuiParameters curParams)
                                                  throws DisGeNetException

Throws:

DisGeNetException

getGeneProjectionBySrc

HashMap<String,ArrayList<String>> getGeneProjectionBySrc(GuiParameters curParams)

getGeneList

ArrayList<String> getGeneList(GuiParameters curParams)

getVariantList

ArrayList<String> getVariantList(GuiParameters curParams)

getDiseaseAttributes

HashMap<String,HashMap<String,String>> getDiseaseAttributes(GuiParameters curParams)
                                                     throws DisGeNetException

Throws:

DisGeNetException

getDiseaseProjectionBySrc

HashMap<String,ArrayList<String>> getDiseaseProjectionBySrc(GuiParameters curParams)

getDiseaseList

ArrayList<String> getDiseaseList(GuiParameters curParams)

getGeneDiseaseNetworkBySrc

HashMap<String,ArrayList<String>> getGeneDiseaseNetworkBySrc(GuiParameters curParams)
                                                      throws DisGeNetException

Throws:

DisGeNetException

getGeneIdList

ArrayList<String> getGeneIdList(GuiParameters params)

getDiseaseListVariant

ArrayList<String> getDiseaseListVariant(GuiParameters params)

getGeneListVariant

ArrayList<String> getGeneListVariant(GuiParameters params)

getVariantDiseaseNetworkBySrc

HashMap<String,ArrayList<String>> getVariantDiseaseNetworkBySrc(GuiParameters curParams)
                                                         throws DisGeNetException

Throws:

DisGeNetException

getAssociatedGenesToVariants

Map<String,String> getAssociatedGenesToVariants(List<String> genes)
                                         throws SQLException

Throws:

SQLException

getDiseasesAssociatedToGenes

ArrayList<String> getDiseasesAssociatedToGenes(GuiParameters curParams)