Uses of Class
es.imim.DisGeNET.exceptions.DisGeNetException

Packages that use DisGeNetException

Package	Description
es.imim.DisGeNET.database
es.imim.DisGeNET.internal.annotation
es.imim.DisGeNET.internal.enrichment
es.imim.DisGeNET.internal.tables
es.imim.DisGeNET.network

Uses of DisGeNetException in es.imim.DisGeNET.database

Methods in es.imim.DisGeNET.database that throw DisGeNetException

Modifier and Type	Method and Description
HashMap<String,HashMap<String,String>>	Database.getDiseaseAttributes(GuiParameters curParams)
HashMap<String,HashMap<String,String>>	DatabaseImpl.getDiseaseAttributes(GuiParameters params)
Map<String,List<String>>	Database.getDiseasesAssociatedToGenes(GuiParameters params)
Map<String,List<String>>	DatabaseImpl.getDiseasesAssociatedToGenes(GuiParameters params)
HashMap<String,HashMap<String,String>>	Database.getGeneAttributes(GuiParameters curParams)
HashMap<String,HashMap<String,String>>	DatabaseImpl.getGeneAttributes(GuiParameters curParams)
HashMap<String,ArrayList<String>>	Database.getGeneDiseaseNetworkBySrc(GuiParameters curParams)
HashMap<String,ArrayList<String>>	DatabaseImpl.getGeneDiseaseNetworkBySrc(GuiParameters curParams)
HashMap<String,ArrayList<String>>	Database.getVariantDiseaseNetworkBySrc(GuiParameters curParams)
HashMap<String,ArrayList<String>>	DatabaseImpl.getVariantDiseaseNetworkBySrc(GuiParameters curParams)

Uses of DisGeNetException in es.imim.DisGeNET.internal.annotation

Methods in es.imim.DisGeNET.internal.annotation that throw DisGeNetException

Modifier and Type	Method and Description
String	AnnotateVariantsTask.buildSearchField()
String	AnnotateGenesTask.buildSearchField()
String	AnnotateDiseasesTask.buildSearchField()

Uses of DisGeNetException in es.imim.DisGeNET.internal.enrichment

Constructors in es.imim.DisGeNET.internal.enrichment that throw DisGeNetException

Constructor and Description
FilterEnrichmentTask(EnrichmentCytoPanel enrichmentPanel, org.cytoscape.model.CyNetwork network, Integer lNitems, Integer hNitems, int[] indexCols)

Uses of DisGeNetException in es.imim.DisGeNET.internal.tables

Methods in es.imim.DisGeNET.internal.tables that throw DisGeNetException

Modifier and Type	Method and Description
void	DisGeNetCyTableBase.fillNodeColumns(org.cytoscape.model.CyTable cyTable, Map<String,Long> attributes)
void	DisGeNETCyTableNodeInterface.fillNodeColumns(org.cytoscape.model.CyTable cyTable, Map<String,Long> suids)
void	DisGeNetCyTableDisease.fillNodeColumns(org.cytoscape.model.CyTable disTable, Map<String,Long> suids) Fills the disease related columns with the data retrived from the current search parameters.
void	DisGeNetCyTableGene.fillNodeColumns(org.cytoscape.model.CyTable geneTable, Map<String,Long> suids) Fills the gene related columns with the data retrived from the current search parameters.

Uses of DisGeNetException in es.imim.DisGeNET.network

Methods in es.imim.DisGeNET.network that throw DisGeNetException

Modifier and Type	Method and Description
void	NetworkBuilder.buildDiseaseNet(GuiParameters curParams) Generic function to create disease network
void	NetworkBuilder.buildGeneDiseaseNet(GuiParameters curParams) Get the gene/disease net information from the database and call generic function to build net
void	NetworkBuilder.buildGeneNet(GuiParameters curParams) Generic function to create gene network
void	NetworkBuilder.buildNet(List<String> list1, List<String> list2, List<String> nrCommonEntities, String src, GuiParameters params) Builds a new disease-disease or gene-gene network.
void	NetworkBuilder.buildNetWithEdgeAttributes(ArrayList<String> intList, ArrayList<String> disList, ArrayList<String> genList, ArrayList<String> assocList, ArrayList<String> assocTypeList, ArrayList<String> srcList, ArrayList<String> sentenceList, ArrayList<String> pmidsList, ArrayList<String> scoreList, ArrayList<String> eiList, ArrayList<String> elList, ArrayList<String> yearList, GuiParameters params)
void	NetworkBuilder.buildVariantDiseaseNet(GuiParameters curParams) Get the variant/disease net information from the database and call generic function to build net
Map<String,Long>	NetworkBuilder.expandGeneDiseaseNet(GuiParameters curParams, Map<String,Long> nodeMap) Expands the selected gene disease network using the selected nodes as reference.
Map<String,Long>	NetworkBuilder.expandVariantDiseaseNet(GuiParameters curParams, Map<String,Long> nodeMap) Expands the selected variant disease network using the selected nodes as reference.
void	NetworkBuilder.showVariantNetWithGenes() Calls the method to expand a variant disease network and updates the view.