public class DisGeNetCyTableGene extends Object implements DisGeNETCyTableNodeInterface
Constructor and Description |
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DisGeNetCyTableGene() |
DisGeNetCyTableGene(GuiParameters params) |
Modifier and Type | Method and Description |
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void |
addEdgeColumns(org.cytoscape.model.CyTable cyTable) |
void |
addNodeColumns(org.cytoscape.model.CyTable geneTable)
Adds all the colums related to the diseases to the cytoscape table.
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void |
fillEdgeColumns(org.cytoscape.model.CyNetwork cyNetwork,
Map<org.cytoscape.model.CyEdge,Map<String,Object>> edgeAttributes) |
void |
fillNodeColumns(org.cytoscape.model.CyTable geneTable,
Map<String,Long> suids)
Fills the gene related columns with the data retrived from the current search parameters.
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GuiParameters |
getParams() |
void |
setParams(GuiParameters params) |
public DisGeNetCyTableGene(GuiParameters params)
public DisGeNetCyTableGene()
public GuiParameters getParams()
public void setParams(GuiParameters params)
public void addNodeColumns(org.cytoscape.model.CyTable geneTable)
addNodeColumns
in interface DisGeNETCyTableNodeInterface
geneTable
- the table to add the columns.public void fillNodeColumns(org.cytoscape.model.CyTable geneTable, Map<String,Long> suids) throws DisGeNetException
fillNodeColumns
in interface DisGeNETCyTableNodeInterface
geneTable
- the table to fill the columns.suids
- the list of all the nodes with their identifiers.DisGeNetException
- low level exception with the error message.public void addEdgeColumns(org.cytoscape.model.CyTable cyTable)
addEdgeColumns
in interface DisGeNETCyTableNodeInterface
public void fillEdgeColumns(org.cytoscape.model.CyNetwork cyNetwork, Map<org.cytoscape.model.CyEdge,Map<String,Object>> edgeAttributes)
fillEdgeColumns
in interface DisGeNETCyTableNodeInterface
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