Uses of Class
es.imim.DisGeNET.gui.GuiParameters

Packages that use GuiParameters

Package	Description
es.imim.DisGeNET.database
es.imim.DisGeNET.gui
es.imim.DisGeNET.internal
es.imim.DisGeNET.internal.tables
es.imim.DisGeNET.network

Uses of GuiParameters in es.imim.DisGeNET.database

Methods in es.imim.DisGeNET.database with parameters of type GuiParameters

Modifier and Type	Method and Description
ArrayList<String>	Database.getAssociatedDiseases(String geneId, String src, GuiParameters curParams)
ArrayList<String>	DatabaseImpl.getAssociatedDiseases(String geneId, String src, GuiParameters params)
ArrayList<String>	Database.getAssociatedDiseases(String geneId, String src, String assocType, GuiParameters curParams)
ArrayList<String>	DatabaseImpl.getAssociatedDiseases(String geneId, String src, String assocType, GuiParameters params)
ArrayList<String>	Database.getAssociatedGeneNames(String diseaseId, String source, String associationType, GuiParameters curParams)
ArrayList<String>	DatabaseImpl.getAssociatedGeneNames(String diseaseId, String src, String assocType, GuiParameters params)
HashMap<String,HashMap<String,String>>	Database.getDiseaseAttributes(GuiParameters curParams)
HashMap<String,HashMap<String,String>>	DatabaseImpl.getDiseaseAttributes(GuiParameters params)
HashMap<String,String>	Database.getDiseaseClassForAllDiseases(GuiParameters curParams)
HashMap<String,String>	DatabaseImpl.getDiseaseClassForAllDiseases(GuiParameters params)
HashMap<String,String>	Database.getDiseaseClassForAllGenes(String source, GuiParameters curParams)
HashMap<String,String>	DatabaseImpl.getDiseaseClassForAllGenes(String source, GuiParameters params)
String	Database.getDiseaseClassId(String diseaseClassName, GuiParameters curParams)
String	DatabaseImpl.getDiseaseClassId(String diseaseClassName, GuiParameters params)
String	Database.getDiseaseId(String diseaseName, GuiParameters curParams)
String	DatabaseImpl.getDiseaseId(String diseaseName, GuiParameters params)
String	Database.getDiseaseIdWildCard(String diseaseName, GuiParameters curParams)
String	DatabaseImpl.getDiseaseIdWildCard(String diseaseName, GuiParameters params)
ArrayList<String>	Database.getDiseaseList(GuiParameters curParams)
ArrayList<String>	DatabaseImpl.getDiseaseList(GuiParameters curParams)
ArrayList<String>	Database.getDiseaseListVariant(GuiParameters params)
ArrayList<String>	DatabaseImpl.getDiseaseListVariant(GuiParameters curParams)
HashMap<String,ArrayList<String>>	Database.getDiseaseProjectionBySrc(GuiParameters curParams)
HashMap<String,ArrayList<String>>	DatabaseImpl.getDiseaseProjectionBySrc(GuiParameters curParams)
HashMap<String,String>	Database.getEdgeAttributes(String assocId, GuiParameters curParams)
HashMap<String,String>	DatabaseImpl.getEdgeAttributes(String assocId, GuiParameters params)
HashMap<String,ArrayList<String>>	Database.getExpandedGeneDiseaseNetwork(GuiParameters curParams, ArrayList<String> ids)
HashMap<String,ArrayList<String>>	DatabaseImpl.getExpandedGeneDiseaseNetwork(GuiParameters curParams, ArrayList<String> ids)
HashMap<String,HashMap<String,String>>	Database.getGeneAttributes(GuiParameters curParams)
HashMap<String,HashMap<String,String>>	DatabaseImpl.getGeneAttributes(GuiParameters curParams)
HashMap<String,String>	Database.getGeneAttributes(String geneId, GuiParameters curParams)
HashMap<String,String>	DatabaseImpl.getGeneAttributes(String geneId, GuiParameters params)
ArrayList<String>	Database.getGeneDiseaseList(GuiParameters curParams)
ArrayList<String>	DatabaseImpl.getGeneDiseaseList(GuiParameters curParams)
HashMap<String,ArrayList<String>>	Database.getGeneDiseaseNetworkBySrc(GuiParameters curParams)
HashMap<String,ArrayList<String>>	DatabaseImpl.getGeneDiseaseNetworkBySrc(GuiParameters curParams)
String	Database.getGeneId(String geneName, GuiParameters curParams)
String	DatabaseImpl.getGeneId(String geneName, GuiParameters params)
ArrayList<String>	Database.getGeneIdList(GuiParameters params)
ArrayList<String>	DatabaseImpl.getGeneIdList(GuiParameters params)
String	Database.getGeneIdWildCard(String geneName, GuiParameters params)
String	DatabaseImpl.getGeneIdWildCard(String geneName, GuiParameters params)
ArrayList<String>	Database.getGeneList(GuiParameters curParams)
ArrayList<String>	DatabaseImpl.getGeneList(GuiParameters curParams)
HashMap<String,ArrayList<String>>	Database.getGeneProjectionBySrc(GuiParameters curParams)
HashMap<String,ArrayList<String>>	DatabaseImpl.getGeneProjectionBySrc(GuiParameters curParams)
ArrayList<String>	DatabaseImpl.getVariantAssociatedDiseases(String variantId, String src, String assocType, GuiParameters params)
HashMap<String,HashMap<String,String>>	DatabaseImpl.getVariantAttributes(GuiParameters curParams)
HashMap<String,ArrayList<String>>	Database.getVariantDiseaseNetworkBySrc(GuiParameters curParams)
HashMap<String,ArrayList<String>>	DatabaseImpl.getVariantDiseaseNetworkBySrc(GuiParameters curParams)
String	DatabaseImpl.getVariantIdWildCard(String variantId, GuiParameters params)
ArrayList<String>	Database.getVariantList(GuiParameters curParams)
ArrayList<String>	DatabaseImpl.getVariantList(GuiParameters curParams)

Uses of GuiParameters in es.imim.DisGeNET.gui

Methods in es.imim.DisGeNET.gui that return GuiParameters

Modifier and Type	Method and Description
GuiParameters	MainPanel.getParams()

Methods in es.imim.DisGeNET.gui with parameters of type GuiParameters

Modifier and Type	Method and Description
void	MainPanel.setParams(GuiParameters params)

Uses of GuiParameters in es.imim.DisGeNET.internal

Constructors in es.imim.DisGeNET.internal with parameters of type GuiParameters

Constructor and Description
DisGeNETCyTable(GuiParameters params)

Uses of GuiParameters in es.imim.DisGeNET.internal.tables

Methods in es.imim.DisGeNET.internal.tables that return GuiParameters

Modifier and Type	Method and Description
GuiParameters	DisGeNetCyTableVariant.getParams()
GuiParameters	DisGeNetCyTableDisease.getParams()
GuiParameters	DisGeNetCyTableGene.getParams()

Methods in es.imim.DisGeNET.internal.tables with parameters of type GuiParameters

Modifier and Type	Method and Description
void	DisGeNetCyTableVariant.setParams(GuiParameters params)
void	DisGeNetCyTableDisease.setParams(GuiParameters params)
void	DisGeNetCyTableGene.setParams(GuiParameters params)

Constructors in es.imim.DisGeNET.internal.tables with parameters of type GuiParameters

Constructor and Description
DisGeNetCyTableDisease(GuiParameters params)
DisGeNetCyTableGene(GuiParameters params)
DisGeNetCyTableVariant(GuiParameters params)

Uses of GuiParameters in es.imim.DisGeNET.network

Methods in es.imim.DisGeNET.network with parameters of type GuiParameters

Modifier and Type	Method and Description
ArrayList<String>	NetworkBuilder.buildDiseaseNet(GuiParameters curParams) Generic function to create disease network
ArrayList<String>	NetworkBuilder.buildGeneDiseaseNet(GuiParameters curParams) Get the gene/disease net information from the database and call generic function to build net
ArrayList<String>	NetworkBuilder.buildGeneNet(GuiParameters curParams) Generic function to create gene network
void	NetworkBuilder.buildNet(ArrayList<String> list1, ArrayList<String> list2, String src, GuiParameters params)
void	NetworkBuilder.buildNetWithEdgeAttributes(ArrayList<String> disList, ArrayList<String> genList, ArrayList<String> list3, ArrayList<String> assocTypeList, ArrayList<String> srcList, ArrayList<String> sentenceList, ArrayList<String> pmidsList, ArrayList<String> scoreList, GuiParameters params)
ArrayList<String>	NetworkBuilder.buildVariantDiseaseNet(GuiParameters curParams) Get the variant/disease net information from the database and call generic function to build net
void	NetworkBuilder.expandGeneDiseaseNet(GuiParameters curParams, ArrayList<String> ids, boolean expand, boolean foreignNet)
void	NetworkBuilder.initAdditionalStyleAttributes(GuiParameters<?,?> params)

Constructors in es.imim.DisGeNET.network with parameters of type GuiParameters

Constructor and Description
NetAction(GuiParameters curParams)
NetAction(GuiParameters curParams, JTabbedPane pane)
NetworkBuilder(GuiParameters params)