be.svlandeg.diffany.examples

Class FuzzyNetworks

java.lang.Object

be.svlandeg.diffany.examples.GenericExample

be.svlandeg.diffany.examples.FuzzyNetworks

public class FuzzyNetworks
extends GenericExample

This class provides examples to benchmark the fuzzy consensus functionality. Specifically, different interaction types, weights and negation states are mixed.

Author:

Sofie Van Landeghem

Field Summary

Fields inherited from class be.svlandeg.diffany.examples.GenericExample

taskMonitor

Constructor Summary

Constructors

Constructor and Description
FuzzyNetworks()

Method Summary

Modifier and Type	Method and Description
Project	getDefaultProject() Get a custom project.
int	getDefaultRunConfigurationID(Project p) Add some custom-defined networks to the project: 1 reference network and 3 condition-specific.
int	getTestConfigurationWithoutReference(Project p, int supportingCutoff, boolean refAsCond) Add some custom-defined networks to the project: 4 condition-specific networks, no reference.
int	getTestConfigurationWithReference(Project p, int supportingCutoff) Add some custom-defined networks to the project: 1 reference network and 3 condition-specific.
static void	main(String[] args) Testing the example using console output (use TestFuzzyConsensus for the JUnit version!)

Methods inherited from class be.svlandeg.diffany.examples.GenericExample

getName, printAllNetworks, printAllNetworks, printAllNetworks, printNetwork, setName, setTaskMonitor

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FuzzyNetworks

public FuzzyNetworks()

Method Detail

getDefaultProject

public Project getDefaultProject()

Get a custom project.

Specified by:

getDefaultProject in class GenericExample

Returns:

an example project illustrating figure 1C.

getDefaultRunConfigurationID

public int getDefaultRunConfigurationID(Project p)

Add some custom-defined networks to the project: 1 reference network and 3 condition-specific.

Specified by:

getDefaultRunConfigurationID in class GenericExample

Parameters:

p - the fuzzy project

Returns:

the resulting configuration ID.

getTestConfigurationWithReference

public int getTestConfigurationWithReference(Project p,
                                             int supportingCutoff)

Add some custom-defined networks to the project: 1 reference network and 3 condition-specific.

Parameters:

p - the fuzzy project

supportingCutoff - the minimal number of networks that need to agree on a certain edge

Returns:

the resulting configuration ID.

getTestConfigurationWithoutReference

public int getTestConfigurationWithoutReference(Project p,
                                                int supportingCutoff,
                                                boolean refAsCond)

Add some custom-defined networks to the project: 4 condition-specific networks, no reference.

Parameters:

p - the fuzzy project

supportingCutoff - the minimal number of networks that need to agree on a certain edge

refAsCond - whether or not to include the reference network as "condition 0". If not, only 3 input networks are used.

Returns:

the resulting configuration ID.

main

public static void main(String[] args)

Testing the example using console output (use TestFuzzyConsensus for the JUnit version!)

Parameters:

args - (ignored) argument list