Constant Field Values

Contents

• org.cy3sbml.*

org.cy3sbml.*

org.cy3sbml.CyActivator

Modifier and Type	Constant Field	Value
public static final String	PROPERTIES_FILE	"cy3sbml.props"

org.cy3sbml.IdentifiersConstants

Modifier and Type	Constant Field	Value
public static final String	OLS_BASE_URL	"https://www.ebi.ac.uk/ols4/ontologies/"

org.cy3sbml.ResourceExtractor

Modifier and Type	Constant Field	Value
public static final String	GUI_RESOURCES	"/gui/"

org.cy3sbml.SBML

Modifier and Type	Constant Field	Value
public static final String	ATTR_ARCHIVE	"archive"
public static final String	ATTR_AREA_UNITS	"areaUnits"
public static final String	ATTR_BOUNDARY_CONDITION	"boundaryCondition"
public static final String	ATTR_CHARGE	"sbml charge"
public static final String	ATTR_COFACTOR_CLONE	"cofactorClone"
public static final String	ATTR_COMP_CONVERSION_FACTOR	"comp_conversionFactor"
public static final String	ATTR_COMP_DELETION	"comp_deletion"
public static final String	ATTR_COMP_EXTENT_CONVERSION_FACTOR	"comp_extentConversionFactor"
public static final String	ATTR_COMP_IDREF	"comp_idRef"
public static final String	ATTR_COMP_METAIDREF	"comp_metaIdRef"
public static final String	ATTR_COMP_MODELREF	"comp_modelRef"
public static final String	ATTR_COMP_PORTREF	"comp_portRef"
public static final String	ATTR_COMP_RESOLUTION	"comp_resolution"
public static final String	ATTR_COMP_SBASEREF	"comp_sBaseRef"
public static final String	ATTR_COMP_SUBMODELREF	"comp_submodelRef"
public static final String	ATTR_COMP_TARGET_ID	"comp_targetId"
public static final String	ATTR_COMP_TARGET_METAID	"comp_targetMetaId"
public static final String	ATTR_COMP_TARGET_MODEL	"comp_targetModel"
public static final String	ATTR_COMP_TARGET_TYPE	"comp_targetType"
public static final String	ATTR_COMP_TIME_CONVERSION_FACTOR	"comp_timeConversionFactor"
public static final String	ATTR_COMP_UNITREF	"comp_unitRef"
public static final String	ATTR_COMPARTMENT	"sbml compartment"
public static final String	ATTR_COMPARTMENT_CODE	"compartmentCode"
public static final String	ATTR_CONSTANT	"constant"
public static final String	ATTR_CONVERSION_FACTOR	"conversionFactor"
public static final String	ATTR_CYID	"cyId"
public static final String	ATTR_DERIVED_UNITS	"derivedUnits"
public static final String	ATTR_DISTRIB_UNCERTAINTY	"distrib_uncertainty"
public static final String	ATTR_DISTRIB_UNCERTAINTY_COUNT	"distrib_uncertaintyCount"
public static final String	ATTR_EQUATION	"equation"
public static final String	ATTR_EXTENT_UNITS	"extentUnits"
public static final String	ATTR_FAST	"fast"
public static final String	ATTR_FBC_CHARGE	"fbc_charge"
public static final String	ATTR_FBC_CHEMICAL_FORMULA	"fbc_chemicalFormula"
public static final String	ATTR_FBC_COEFFICIENT	"fbc_coefficient"
public static final String	ATTR_FBC_LOWER_BOUND	"fbc_lowerBound"
public static final String	ATTR_FBC_LOWER_FLUX_BOUND	"fbc_lowerFluxBound"
public static final String	ATTR_FBC_OBJECTIVE_TEMPLATE	"fbc_objective-%1$s"
public static final String	ATTR_FBC_OBJECTIVE_VARIABLE_TYPE_TEMPLATE	"fbc_objective-%1$s_variableType"
public static final String	ATTR_FBC_STRICT	"fbc_strict"
public static final String	ATTR_FBC_UPPER_BOUND	"fbc_upperBound"
public static final String	ATTR_FBC_UPPER_FLUX_BOUND	"fbc_upperFluxBound"
public static final String	ATTR_FBC_VARIABLE_TYPE	"fbc_variableType"
public static final String	ATTR_HAS_ONLY_SUBSTANCE_UNITS	"hasOnlySubstanceUnits"
public static final String	ATTR_ID	"sbml id"
public static final String	ATTR_INITIAL_AMOUNT	"sbml initial amount"
public static final String	ATTR_INITIAL_ASSIGNMENT	"initialAssignment"
public static final String	ATTR_INITIAL_CONCENTRATION	"sbml initial concentration"
public static final String	ATTR_KINETIC_LAW	"kineticLaw"
public static final String	ATTR_LAYOUT_GLYPH	"layout_glyph"
public static final String	ATTR_LAYOUT_GLYPH_TYPE	"layout_glyphType"
public static final String	ATTR_LAYOUT_HEIGHT	"layout_height"
public static final String	ATTR_LAYOUT_ID	"layout_id"
public static final String	ATTR_LAYOUT_ROLE	"layout_role"
public static final String	ATTR_LAYOUT_WIDTH	"layout_width"
public static final String	ATTR_LAYOUT_X	"layout_x"
public static final String	ATTR_LAYOUT_Y	"layout_y"
public static final String	ATTR_LENGTH_UNITS	"lengthUnits"
public static final String	ATTR_MATH	"math"
public static final String	ATTR_MESSAGE	"message"
public static final String	ATTR_METAID	"metaId"
public static final String	ATTR_NAME	"shared name"
public static final String	ATTR_PORT_SID	"portSid"
public static final String	ATTR_QUAL_INITIAL_LEVEL	"qual_initialLevel"
public static final String	ATTR_QUAL_MAX_LEVEL	"qual_maxLevel"
public static final String	ATTR_QUAL_OUTPUT_LEVEL	"qual_outputLevel"
public static final String	ATTR_QUAL_QUALITATIVE_SPECIES	"qual_qualitativeSpecies"
public static final String	ATTR_QUAL_RESULT_LEVELS	"qual_resultLevels"
public static final String	ATTR_QUAL_SIGN	"qual_sign"
public static final String	ATTR_QUAL_THRESHOLD_LEVEL	"qual_tresholdLevel"
public static final String	ATTR_QUAL_TRANSITION_EFFECT	"qual_transitionEffect"
public static final String	ATTR_REVERSIBLE	"reversible"
public static final String	ATTR_SBOTERM	"sbo"
public static final String	ATTR_SIZE	"size"
public static final String	ATTR_SPATIAL_DIMENSIONS	"spatialDimensions"
public static final String	ATTR_STOICHIOMETRY	"stoichiometry"
public static final String	ATTR_SUBSTANCE_UNITS	"substanceUnits"
public static final String	ATTR_TIME_UNITS	"timeUnits"
public static final String	ATTR_UNIT_EXPONENT	"exponent"
public static final String	ATTR_UNIT_KIND	"kind"
public static final String	ATTR_UNIT_MULTIPLIER	"multiplier"
public static final String	ATTR_UNIT_SCALE	"scale"
public static final String	ATTR_UNIT_SID	"unitSid"
public static final String	ATTR_UNITS	"units"
public static final String	ATTR_USE_VALUES_FROM_TRIGGER_TIME	"useValuesFromTriggerTime"
public static final String	ATTR_VALUE	"value"
public static final String	ATTR_VARIABLE	"variable"
public static final String	ATTR_VOLUME_UNITS	"volumeUnits"
public static final String	COMP_RESOLVED	"resolved"
public static final String	INTERACTION_ATTR	"interaction type"
public static final String	INTERACTION_ATTR_EXTENDED	"shared interaction"
public static final String	INTERACTION_COMP_SBASE_DELETION	"sbase-deletion"
public static final String	INTERACTION_COMP_SBASE_REPLACED_BY	"sbase-replacedBy"
public static final String	INTERACTION_COMP_SBASE_REPLACED_ELEMENT	"sbase-replacedElement"
public static final String	INTERACTION_COMP_SBASEREF_ID	"sbaseRef-id"
public static final String	INTERACTION_COMP_SBASEREF_METAID	"sbaseRef-metaId"
public static final String	INTERACTION_COMP_SBASEREF_PORT	"sbaseRef-port"
public static final String	INTERACTION_COMP_SBASEREF_SUBMODEL	"sbaseRef-submodel"
public static final String	INTERACTION_COMP_SBASEREF_UNIT	"sbaseRef-unit"
public static final String	INTERACTION_DELAY_EVENT	"delay_event"
public static final String	INTERACTION_EVENT_EVENT_ASSIGNMENT	"reference_eventAssignment"
public static final String	INTERACTION_FBC_ASSOCIATION_ASSOCIATION	"association_association"
public static final String	INTERACTION_FBC_ASSOCIATION_REACTION	"association_reaction"
public static final String	INTERACTION_FBC_GENEPRODUCT_SPECIES	"species_geneProduct"
public static final String	INTERACTION_FBC_PARAMETER_USER_DEFINED_CONSTRAINT	"parameter_userDefinedConstraint"
public static final String	INTERACTION_FBC_VARIABLE_USER_DEFINED_CONSTRAINT	"variable_userDefinedConstraint"
public static final String	INTERACTION_LAYOUT_REFERENCE	"layout:reference"
public static final String	INTERACTION_LOCALPARAMETER_KINETICLAW	"localParameter_kineticLaw"
public static final String	INTERACTION_PARAMETER_REACTION	"parameter_reaction"
public static final String	INTERACTION_PRIORITY_EVENT	"priority_event"
public static final String	INTERACTION_QUAL_TRANSITION_INPUT	"input_transition"
public static final String	INTERACTION_QUAL_TRANSITION_OUTPUT	"transition_output"
public static final String	INTERACTION_REACTION_ACTIVATOR	"reaction-activator"
public static final String	INTERACTION_REACTION_COMPARTMENT	"reaction_compartment"
public static final String	INTERACTION_REACTION_INHIBITOR	"reaction-inhibitor"
public static final String	INTERACTION_REACTION_KINETICLAW	"reaction_kineticLaw"
public static final String	INTERACTION_REACTION_MODIFIER	"reaction-modifier"
public static final String	INTERACTION_REACTION_PRODUCT	"reaction-product"
public static final String	INTERACTION_REACTION_REACTANT	"reaction-reactant"
public static final String	INTERACTION_REFERENCE_EVENT_ASSIGNMENT	"reference_eventAssignment"
public static final String	INTERACTION_REFERENCE_FUNCTIONDEFINITION	"reference_functionDefinition"
public static final String	INTERACTION_REFERENCE_INITIAL_ASSIGNMENT	"reference_initialAssignment"
public static final String	INTERACTION_REFERENCE_KINETICLAW	"reference_kineticLaw"
public static final String	INTERACTION_REFERENCE_RULE	"reference_rule"
public static final String	INTERACTION_SBASE_UNITDEFINITION	"sbase_unitDefinition"
public static final String	INTERACTION_SPECIES_COMPARTMENT	"species_compartment"
public static final String	INTERACTION_TRIGGER_EVENT	"trigger_event"
public static final String	INTERACTION_UNIT_UNITDEFINITION	"unit_unitDefinition"
public static final String	INTERACTION_VARIABLE_EVENT_ASSIGNMENT	"variable_eventAssignment"
public static final String	INTERACTION_VARIABLE_INITIAL_ASSIGNMENT	"variable_initialAssignment"
public static final String	INTERACTION_VARIABLE_RULE	"variable_rule"
public static final String	LABEL	"label"
public static final String	LEVEL_VERSION	"sbmlVersion"
public static final String	NETWORKTYPE_ATTR	"sbmlNetwork"
public static final String	NETWORKTYPE_LAYOUT	"sbmlLayout"
public static final String	NETWORKTYPE_SBML	"sbml"
public static final String	NODETYPE_ALGEBRAIC_RULE	"algebraicRule"
public static final String	NODETYPE_ASSIGNMENT_RULE	"assignmentRule"
public static final String	NODETYPE_ATTR	"sbml type"
public static final String	NODETYPE_ATTR_EXTENDED	"sbml type ext"
public static final String	NODETYPE_COMP_DELETION	"comp_deletion"
public static final String	NODETYPE_COMP_PORT	"comp_port"
public static final String	NODETYPE_COMP_REPLACED_BY	"comp_replacedBy"
public static final String	NODETYPE_COMP_REPLACED_ELEMENT	"comp_replacedElement"
public static final String	NODETYPE_COMP_SUBMODEL	"comp_submodel"
public static final String	NODETYPE_COMPARTMENT	"compartment"
public static final String	NODETYPE_CONSTRAINT	"constraint"
public static final String	NODETYPE_EVENT	"event"
public static final String	NODETYPE_EVENT_ASSIGNMENT	"eventAssignment"
public static final String	NODETYPE_FBC_AND	"fbc_and"
public static final String	NODETYPE_FBC_GENEPRODUCT	"fbc_geneProduct"
public static final String	NODETYPE_FBC_OR	"fbc_or"
public static final String	NODETYPE_FBC_USER_DEFINED_CONSTRAINT	"fbc_userDefinedConstraint"
public static final String	NODETYPE_FUNCTION_DEFINITION	"functionDefinition"
public static final String	NODETYPE_GROUP	"group"
public static final String	NODETYPE_INITIAL_ASSIGNMENT	"initialAssignment"
public static final String	NODETYPE_KINETIC_LAW	"kineticLaw"
public static final String	NODETYPE_LAYOUT_COMPARTMENTGLYPH	"layout:compartmentGlyph"
public static final String	NODETYPE_LAYOUT_GENERALGLYPH	"layout:generalGlyph"
public static final String	NODETYPE_LAYOUT_GENERATED	"layout:generated"
public static final String	NODETYPE_LAYOUT_GRAPHICALOBJECT	"layout:graphicalObject"
public static final String	NODETYPE_LAYOUT_REACTIONGLYPH	"layout:reactionGlyph"
public static final String	NODETYPE_LAYOUT_SPECIESGLYPH	"layout:speciesGlyph"
public static final String	NODETYPE_LOCAL_PARAMETER	"localParameter"
public static final String	NODETYPE_PARAMETER	"parameter"
public static final String	NODETYPE_QUAL_SPECIES	"qual_species"
public static final String	NODETYPE_QUAL_TRANSITION	"qual_transition"
public static final String	NODETYPE_RATE_RULE	"rateRule"
public static final String	NODETYPE_REACTION	"reaction"
public static final String	NODETYPE_REACTION_IRREVERSIBLE	"reaction irreversible"
public static final String	NODETYPE_REACTION_REVERSIBLE	"reaction reversible"
public static final String	NODETYPE_SPECIES	"species"
public static final String	NODETYPE_UNIT	"unit"
public static final String	NODETYPE_UNIT_DEFINITION	"unitDefinition"
public static final String	PREFIX_NETWORK_FLAT	"Flat"
public static final String	PROPERTY_VISUAL_STYLE	"cy3sbml.visualStyle"
public static final String	SBML_LAYOUT	"force-directed"
public static final String	STYLE_CY3SBML	"cy3sbml"
public static final String	STYLE_CY3SBML_DARK	"cy3sbml-dark"
public static final String	STYLE_SUFFIX_LAYOUT	"-layout"
public static final String	SUBNETWORK_ALL	"all"
public static final String	SUBNETWORK_ATTR	"sbmlSubnetwork"
public static final String	SUBNETWORK_BASE	"base"
public static final String	SUBNETWORK_KINETIC	"kinetic"
public static final String	SUBNETWORK_LAYOUT	"layout"
public static final String	SUFFIX_SUBNETWORK_ALL	"__all"
public static final String	SUFFIX_SUBNETWORK_BASE	""
public static final String	SUFFIX_SUBNETWORK_KINETIC	"__kinetic"
public static final String	SUFFIX_SUBNETWORK_LAYOUT	"__layout_"

org.cy3sbml.SBMLCore

Modifier and Type	Constant Field	Value
public static final String	INTERACTION_TYPE_ATTR	"interaction type"
public static final String	INTERACTION_TYPE_REACTION_MODIFIER	"reaction-modifier"
public static final String	INTERACTION_TYPE_REACTION_PRODUCT	"reaction-product"
public static final String	INTERACTION_TYPE_REACTION_REACTANT	"reaction-reactant"
public static final String	KINETIC_LAW_ATTR_TEMPLATE	"kineticLaw-%1$s"
public static final String	KINETIC_LAW_UNITS_ATTR_TEMPLATE	"kineticLaw-%1$s-units"
public static final String	NODE_NAME_ATTR_LABEL	"name"
public static final String	SBML_CHARGE_ATTR	"sbml charge"
public static final String	SBML_COMPARTMENT_ATTR	"sbml compartment"
public static final String	SBML_ID_ATTR	"sbml id"
public static final String	SBML_INITIAL_AMOUNT_ATTR	"sbml initial amount"
public static final String	SBML_INITIAL_CONCENTRATION_ATTR	"sbml initial concentration"
public static final String	SBML_TYPE_ATTR	"sbml type"
public static final String	SBML_TYPE_REACTION	"reaction"
public static final String	SBML_TYPE_SPECIES	"species"

org.cy3sbml.biomodel.BiomodelLoader

Modifier and Type	Constant Field	Value
public static final String	SUFFIX	".xml"

org.cy3sbml.biomodel.BiomodelsQuery

Modifier and Type	Constant Field	Value
public static final int	MAX_RESULTS	1000

org.cy3sbml.biomodel.SearchContent

Modifier and Type	Constant Field	Value
public static final String	CONNECT_AND	"AND"
public static final String	CONNECT_OR	"OR"
public static final String	CONTENT_MODE	"MODE"
public static final String	CONTENT_NAME	"NAME"
public static final String	PARSED_IDS	"PARSED IDS"

org.cy3sbml.cofactors.CofactorManager

Modifier and Type	Constant Field	Value
public static final double	CLONE_DISTANCE	70.0

org.cy3sbml.commands.Commands

Modifier and Type	Constant Field	Value
public static final String	NAMESPACE	"cy3sbml"

org.cy3sbml.gui.BrowserHyperlinkListener

Modifier and Type	Constant Field	Value
public static final String	URL_BIOMODELS	"https://cy3sbml-biomodels"
public static final String	URL_CHANGESTATE	"https://cy3sbml-changestate"
public static final String	URL_COFACTOR_MERGE	"https://cy3sbml-cofactor-merge"
public static final String	URL_COFACTOR_SPLIT	"https://cy3sbml-cofactor-split"
public static final String	URL_EXAMPLES	"https://cy3sbml-examples"
public static final String	URL_HELP	"https://cy3sbml-help"
public static final String	URL_HTML_SBASE	"http://html-sbase"
public static final String	URL_IMPORT	"https://cy3sbml-import"
public static final String	URL_LOADLAYOUT	"https://cy3sbml-layoutload"
public static final String	URL_SAVELAYOUT	"https://cy3sbml-layoutsave"
public static final String	URL_SBML4HUMANS	"http://sbml4humans/"
public static final String	URL_SBMLFILE	"http://sbml-file"
public static final String	URL_SELECT_ID	"http://select-id/"
public static final String	URL_SELECT_METAID	"http://select-metaid/"
public static final String	URL_SELECT_TARGET	"http://select-target/"

org.cy3sbml.gui.GUIConstants

Modifier and Type	Constant Field	Value
public static final String	DESCRIPTION_BIOMODELS	"BioModels Import"
public static final String	DESCRIPTION_CHANGESTATE	"Hide|show panel"
public static final String	DESCRIPTION_COFACTOR_MERGE	"Merge cofactor nodes"
public static final String	DESCRIPTION_COFACTOR_SPLIT	"Split cofactor nodes"
public static final String	DESCRIPTION_EXAMPLES	"SBML examples"
public static final String	DESCRIPTION_HELP	"Help"
public static final String	DESCRIPTION_IMPORT	"Import SBML"
public static final String	DESCRIPTION_LOADLAYOUT	"Load Layout"
public static final String	DESCRIPTION_SAVELAYOUT	"Save Layout"
public static final float	GRAVITY_BIOMODELS	110.0f
public static final float	GRAVITY_CHANGESTATE	100.0f
public static final float	GRAVITY_COFACTOR_MERGE	113.5f
public static final float	GRAVITY_COFACTOR_SPLIT	113.0f
public static final float	GRAVITY_EXAMPLES	106.0f
public static final float	GRAVITY_HELP	112.0f
public static final float	GRAVITY_IMPORT	101.0f
public static final float	GRAVITY_LOADLAYOUT	114.0f
public static final float	GRAVITY_SAVELAYOUT	120.0f
public static final String	HTML_EXAMPLE_RESOURCE	"/gui/examples.html"
public static final String	HTML_HELP_RESOURCE	"/gui/help.html"
public static final String	ICON_BIOMODELS	"/gui/images/biomodels.png"
public static final String	ICON_CHANGESTATE	"/gui/images/changestate.png"
public static final String	ICON_COFACTOR_MERGE	"/gui/images/cofactor-merge.png"
public static final String	ICON_COFACTOR_SPLIT	"/gui/images/cofactor-split.png"
public static final String	ICON_EXAMPLES	"/gui/images/examples.png"
public static final String	ICON_HELP	"/gui/images/help.png"
public static final String	ICON_IMPORT	"/gui/images/import.png"
public static final String	ICON_LOADLAYOUT	"/gui/images/layout-load.png"
public static final String	ICON_SAVELAYOUT	"/gui/images/layout-save.png"
public static final String	LOGO_BIOMODELS	"/gui/images/logos/biomodels_logo.png"

org.cy3sbml.layout.XMLInterface

Modifier and Type	Constant Field	Value
public static final String	BOX	"boundingBox"
public static final String	BOX_CYID	"cyId"
public static final String	BOX_GLYPH	"glyph"
public static final String	BOX_HEIGHT	"height"
public static final String	BOX_ID	"id"
public static final String	BOX_LIST	"listOfBoundingBoxes"
public static final String	BOX_WIDTH	"width"
public static final String	BOX_X	"xpos"
public static final String	BOX_Y	"ypos"
public static final String	LAYOUT	"layout"

org.cy3sbml.miriam.RegistryUtil

Modifier and Type	Constant Field	Value
public static final String	URL_MIRIAM_JSON	"https://registry.api.identifiers.org/resolutionApi/getResolverDataset"

org.cy3sbml.sbml4humans.Sbml4HumansClient

Modifier and Type	Constant Field	Value
public static final String	DEFAULT_URL	"https://sbml4humans.de/"
public static final long	MAX_UPLOAD_BYTES	104857600L
public static final String	PROPERTY_API	"cy3sbml.sbml4humans.api"
public static final String	PROPERTY_URL	"cy3sbml.sbml4humans.url"

org.cy3sbml.sbml4humans.Sbml4HumansConsent

Modifier and Type	Constant Field	Value
public static final String	PROPERTY_CONFIRMED	"cy3sbml.sbml4humans.confirmed"

org.cy3sbml.styles.StyleInfo_cy3sbml

Modifier and Type	Constant Field	Value
public static final String	NAME	"cy3sbml"
public static final String	TEMPLATE	"/styles/template_cy3sbml.xml"

org.cy3sbml.styles.StyleInfo_cy3sbmlDark

Modifier and Type	Constant Field	Value
public static final String	NAME	"cy3sbml-dark"
public static final String	TEMPLATE	"/styles/template_cy3sbml-dark.xml"

org.cy3sbml.uniprot.UniprotHTMLFields

Modifier and Type	Constant Field	Value
public static final String	ACCESSION	"{ACCESSION}"
public static final String	BASE_URL	"{BASE_URL}"
public static final String	CATALYTIC_ACTIVITY	"CATALYTIC_ACTIVITY"
public static final String	COMMENT_TEXT	"{COMMENT_TEXT}"
public static final String	FUNCTION_COMMENT	"FUNCTION_COMMENT"
public static final String	PATHWAY	"PATHWAY"
public static final String	PATHWAY_NAME	"{PATHWAY_NAME}"
public static final String	REACTION_NAME	"{REACTION_NAME}"
public static final String	UNIPROT_ID	"{UNIPROT_ID}"
public static final String	UNIPROT_LINK	"UNIPROT_LINK"
public static final String	UNIPROT_URL	"https://www.uniprot.org/uniprot"

org.cy3sbml.util.MappingUtil

Modifier and Type	Constant Field	Value
public static final String	PREFIX_ALGEBRAIC_RULE	"algebraicRule_"
public static final String	PREFIX_CONSTRAINT	"constraint_"
public static final String	PREFIX_EVENT_ASSIGNMENT	"event_"
public static final String	PREFIX_INITIAL_ASSIGNMENT	"assignment_"
public static final String	PREFIX_KINETIC_LAW	"law_"
public static final String	PREFIX_RULE	"rule_"
public static final String	PREFIX_UNITSID	"UnitSId__"
public static final String	SEPARATOR	"_"

org.cy3sbml.util.SBMLUtil

Modifier and Type	Constant Field	Value
public static final String	ATTR_CHARGE	"charge"
public static final String	ATTR_COMPARTMENT	"compartment"
public static final String	ATTR_INITIAL_AMOUNT	"amount"
public static final String	ATTR_INITIAL_CONCENTRATION	"initialConcentration"
public static final String	TEMPLATE_ALGEBRAIC_RULE	"<~>"
public static final String	TEMPLATE_ASSIGNMENT_RULE	"<%s>"
public static final String	TEMPLATE_RATE_RULE	"<d/dt %s>"