Hierarchy For All Packages

Package Hierarchies:

• org.cy3sbml,
• org.cy3sbml.actions,
• org.cy3sbml.archive,
• org.cy3sbml.biomodel,
• org.cy3sbml.cache,
• org.cy3sbml.chebi,
• org.cy3sbml.cofactors,
• org.cy3sbml.commands,
• org.cy3sbml.comp,
• org.cy3sbml.gui,
• org.cy3sbml.layout,
• org.cy3sbml.mapping,
• org.cy3sbml.miriam,
• org.cy3sbml.ols,
• org.cy3sbml.reader,
• org.cy3sbml.sbml4humans,
• org.cy3sbml.styles,
• org.cy3sbml.uniprot,
• org.cy3sbml.util,
• org.cy3sbml.util.filter

Class Hierarchy

• java.lang.Object
  • javax.swing.AbstractAction (implements javax.swing.Action, java.lang.Cloneable, java.io.Serializable)
    • org.cytoscape.application.swing.AbstractCyAction (implements org.cytoscape.application.swing.CyAction)
      • org.cy3sbml.actions.BiomodelsAction
      • org.cy3sbml.actions.ChangeStateAction
      • org.cy3sbml.actions.ExamplesAction
      • org.cy3sbml.actions.HelpAction
      • org.cy3sbml.actions.ImportAction
      • org.cy3sbml.actions.LoadLayoutAction
      • org.cy3sbml.actions.MergeCofactorsAction
      • org.cy3sbml.actions.SaveLayoutAction
      • org.cy3sbml.actions.SplitCofactorsAction
  • org.cytoscape.service.util.AbstractCyActivator (implements org.osgi.framework.BundleActivator)
    • org.cy3sbml.CyActivator
  • org.cytoscape.io.read.AbstractInputStreamTaskFactory (implements org.cytoscape.io.read.InputStreamTaskFactory)
    • org.cy3sbml.archive.CombineArchiveReaderTaskFactory
    • org.cy3sbml.SBMLReaderTaskFactory
  • org.cytoscape.work.AbstractTask (implements org.cytoscape.work.Task)
    • org.cy3sbml.archive.CombineArchiveReaderTask (implements org.cytoscape.io.read.CyNetworkReader)
    • org.cy3sbml.reader.FailedReaderTask (implements org.cytoscape.io.read.CyNetworkReader)
    • org.cy3sbml.sbml4humans.Sbml4HumansTask
    • org.cy3sbml.reader.SBMLReaderTask (implements org.cytoscape.io.read.CyNetworkReader, org.cytoscape.work.swing.RequestsUIHelper)
  • org.cy3sbml.util.AnnotationUtil
  • org.cy3sbml.archive.ArchiveDirectories
  • org.cy3sbml.gui.ArchiveHtml
  • org.cy3sbml.util.ASTNodeUtil
  • org.cy3sbml.util.AttributeUtil
  • org.cytoscape.io.BasicCyFileFilter (implements org.cytoscape.io.CyFileFilter)
    • org.cy3sbml.archive.CombineArchiveFileFilter
    • org.cy3sbml.SBMLFileFilter
  • org.cy3sbml.biomodel.BioModelDialogText
  • org.cy3sbml.biomodel.BiomodelLoader
  • org.cy3sbml.biomodel.BiomodelsHtml
  • org.cy3sbml.biomodel.BiomodelsQuery
  • org.cy3sbml.gui.BrowserHyperlinkListener
  • org.cy3sbml.BundleInformation
  • org.cy3sbml.chebi.ChebiAccess
  • org.cy3sbml.cofactors.CofactorManager (implements org.cytoscape.model.events.NetworkAboutToBeDestroyedListener)
  • org.cy3sbml.cofactors.CofactorViews
  • org.cy3sbml.archive.CombineArchive
  • org.cy3sbml.archive.CombineArchiveWriter
  • org.cy3sbml.commands.Commands
  • org.cy3sbml.comp.CompModels
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • javafx.embed.swing.JFXPanel
          • org.cy3sbml.gui.WebViewPanel (implements org.cytoscape.application.swing.CytoPanelComponent2, org.cy3sbml.gui.InfoPanel, org.cytoscape.view.model.events.NetworkViewAboutToBeDestroyedListener, org.cytoscape.view.model.events.NetworkViewAddedListener, org.cytoscape.model.events.RowsSetListener, org.cytoscape.application.events.SetCurrentNetworkListener)
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Dialog
          • javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • org.cy3sbml.biomodel.BiomodelsDialog
  • org.cy3sbml.ConnectionProxy
  • org.cy3sbml.util.DistribUtil
  • org.cy3sbml.gui.GUIConstants
  • org.cy3sbml.util.GUIUtil
  • org.cy3sbml.util.HtmlSanitizer
  • org.cy3sbml.HtmlTemplateParser
  • org.cy3sbml.util.HtmlUtil
  • org.cy3sbml.util.HttpJson
  • org.cy3sbml.IdentifiersConstants
  • org.cy3sbml.util.IOUtil
  • org.cy3sbml.reader.JsbmlSetup
  • org.cy3sbml.gui.KeyValuePairHtml
  • org.cy3sbml.gui.LatestTaskExecutor (implements java.lang.AutoCloseable)
  • org.cy3sbml.styles.LayoutStyleFactory
  • org.cy3sbml.layout.LayoutTools
  • org.cy3sbml.styles.Mapping
    • org.cy3sbml.styles.MappingDiscrete
    • org.cy3sbml.styles.MappingPassthrough
  • org.cy3sbml.util.MappingUtil
  • org.cy3sbml.cache.MemoryCache<K,V>
  • org.cy3sbml.miriam.MiriamRegistry
  • org.cy3sbml.miriam.Namespace
  • org.cy3sbml.cofactors.Network2CofactorMapper (implements java.io.Serializable)
  • org.cy3sbml.mapping.Network2SBMLMapper (implements java.io.Serializable)
  • org.cy3sbml.util.NetworkUtil
  • javafx.scene.Node (implements javafx.event.EventTarget, javafx.css.Styleable)
    • javafx.scene.Parent
      • javafx.scene.layout.Region
        • org.cy3sbml.gui.Browser
  • org.cy3sbml.ols.OlsClient
  • org.cy3sbml.mapping.One2ManyMapping<T1,T2> (implements java.io.Serializable)
  • org.cy3sbml.util.OpenBrowser
  • org.cy3sbml.gui.PanelUpdater (implements java.lang.Runnable)
  • java.lang.Record
    • org.cy3sbml.archive.ArchiveImport
    • org.cy3sbml.archive.ArchiveInfo
    • org.cy3sbml.archive.ArchiveInfo.Creator
    • org.cy3sbml.archive.ArchiveInfo.Entry
    • org.cy3sbml.biomodel.Biomodel
    • org.cy3sbml.biomodel.BiomodelsSearchResult
    • org.cy3sbml.biomodel.BiomodelSummary
    • org.cy3sbml.chebi.ChebiCompound
    • org.cy3sbml.commands.Commands.Command
    • org.cy3sbml.commands.CommandServices
    • org.cy3sbml.comp.CompModels.External
    • org.cy3sbml.layout.CyBoundingBox
    • org.cy3sbml.util.FetchResult<T>
    • org.cy3sbml.miriam.MiriamRegistry.ResolvedURI
    • org.cy3sbml.comp.ModelResolution.Failed (implements org.cy3sbml.comp.ModelResolution)
    • org.cy3sbml.comp.ModelResolution.Resolved (implements org.cy3sbml.comp.ModelResolution)
    • org.cy3sbml.ols.OlsTerm
    • org.cy3sbml.comp.SBaseRefResolution.Resolved (implements org.cy3sbml.comp.SBaseRefResolution)
    • org.cy3sbml.comp.SBaseRefResolution.Unresolved (implements org.cy3sbml.comp.SBaseRefResolution)
    • org.cy3sbml.biomodel.SearchBioModel.Result
    • org.cy3sbml.uniprot.UniprotEntry
  • org.cy3sbml.miriam.RegistryUtil
  • org.cy3sbml.miriam.Resource
  • org.cy3sbml.ResourceExtractor
  • org.cy3sbml.util.filter.SBaseFilter (implements org.sbml.jsbml.util.filters.Filter)
  • org.cy3sbml.gui.SBaseHTMLFactory
  • org.cy3sbml.gui.SBaseHTMLThread (implements java.lang.Runnable)
  • org.cy3sbml.comp.SBaseRefResolver
  • org.cy3sbml.SBML
  • org.cy3sbml.sbml4humans.Sbml4HumansClient
  • org.cy3sbml.sbml4humans.Sbml4HumansConsent
  • org.cy3sbml.SBMLCore
  • org.cy3sbml.actions.SBMLEnableTaskFactory (implements org.cytoscape.work.TaskFactory)
  • org.cy3sbml.SBMLManager (implements org.cy3sbml.comp.CompTargets, org.cytoscape.model.events.NetworkAboutToBeDestroyedListener)
  • org.cy3sbml.util.SBMLUtil
  • org.cy3sbml.biomodel.SearchBioModel
  • org.cy3sbml.biomodel.SearchContent
  • org.cy3sbml.ServiceAdapter
  • org.cy3sbml.SessionData (implements org.cytoscape.session.events.SessionAboutToBeSavedListener, org.cytoscape.session.events.SessionLoadedListener)
  • org.sbml.jsbml.util.StringTools
    • org.sbml.jsbml.util.compilers.FormulaCompiler (implements org.sbml.jsbml.util.compilers.ASTNodeCompiler)
      • org.sbml.jsbml.util.compilers.FormulaCompilerLibSBML
        • org.cy3sbml.util.UnitsFormulaCompiler
  • org.cy3sbml.styles.StyleFactory
  • org.cy3sbml.styles.StyleInfo
    • org.cy3sbml.styles.StyleInfo_cy3sbml
    • org.cy3sbml.styles.StyleInfo_cy3sbmlDark
  • org.cy3sbml.styles.StyleManager (implements org.cytoscape.session.events.SessionLoadedListener)
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • org.cy3sbml.archive.CombineArchiveException
      • java.lang.RuntimeException
        • org.cy3sbml.SBMLReaderError
  • org.cy3sbml.gui.UncertaintyHtml
  • org.cy3sbml.uniprot.UniprotAccess
  • org.cy3sbml.layout.XMLInterface
  • org.cy3sbml.util.XMLUtil

Interface Hierarchy

• org.cy3sbml.archive.CombineArchiveReaderTask.SBMLReaders
• org.cy3sbml.comp.CompTargets
• org.cy3sbml.gui.InfoPanel
• org.cy3sbml.comp.ModelResolution
• org.cy3sbml.comp.SBaseRefResolution
• org.cy3sbml.uniprot.UniprotHTMLFields

Enum Class Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
    • org.cy3sbml.util.FetchStatus
    • org.cy3sbml.styles.Mapping.DataType
    • org.cy3sbml.styles.Mapping.MappingType
    • org.cy3sbml.styles.VisualPropertyKey