Worm Plot

Sequence self-similarity directed graph visualization.
Categories: blastn, data visualization, sequence self-similarity, sequence similarity
###Summary The Worm Plot app for Cytoscape 3 provides a worm plot directed graph visualization of sequence self-similarity. **Note**: Worm Plot currently requires blastn version 2.2.29 or later to be installed. [http://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE=BlastDocs&DOC_TYPE=Download]
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0.9.3

Works with Cytoscape 3.0

Release Notes

Added support for running on JDK 6, using slf4j for logging. Start Cytoscape from `cytoscape.sh` to view the info level app logs.

0.9.2

Works with Cytoscape 3.0

Release Notes

Allow to start on JDK 6 even if not supported.

0.9.1

Works with Cytoscape 3.0

Release Notes

Add checks for dependencies. Will not run if any of JDK 7, blastn version 2.2.24 or later, or grep are not available.

0.9

Works with Cytoscape 3.0

CYTOSCAPE 3

Version 0.9.3

License Click here

Released 12 May 2014

Works with Cytoscape 3.0

Download Stats Click here