Benno Schwikowski

Network inference algorithm to address a wide range of network deconvolution problems available through Cyni

Uses Gene Ontology (GO) categories to direct the network graph layout process and to emphasize nodes biological function.

Cytoscape Network Inference Toolbox puts together several tools that allow infering networks from bio data (For Cytoscape 3.1+)

Finds clusters where member nodes show significant changes in expression levels.