CyFinder is used to find various types of subnetworks with the purpose of identifying biomarkers in disease networks. Features include: 1- Finding Clique Subgraphs. 2- Finding Maximal Cliques. 3- Finding Bipartite subgraphs. 4- Finding Maximal Bicliques of Bipartite Subgraph. 5- Bipartite Layout for 2-column partite set visualization. 6- Finding Connected Components. 7- Community Detection with multiple Algorithms. 8- Finding Minimum/Maximum Spanning Forest 9- Intersecting Networks & Collections as a way of similarity analysis. 10 - Finding Crosstalk between disjoint Subgraphs.


Works with Cytoscape 3.0

Release Notes

Added new features: 1- Connected Components. 2- Maximal Cliques. 3- Maximal Bicliques. 4- Minimum Spanning Forest with Kruskal and Prim. 5- Community Detection with FastGreedy, EdgeBetweenness, and Walktrap. 6- Intersecting Networks and Collections.


Works with Cytoscape 3.2


Version 2.1.1

Released 13 Feb 2022

Works with Cytoscape 3.0

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