CyTargetLinker

Flexible network extension app
**Now released with Cytoscape automation feature** The CyTargetLinker app extends biological networks with regulatory interactions, for example miRNA-target, TF-target or drug-target interactions. Network nodes need to have an attribute containing a biological identifier, eg. Ensembl or NCBI Gene, to link to regulatory information. We now renamed previous Regulatory Interaction Networks (RegINs) to *linksets* to demonstrate the more generic usability of the CyTargetLinker app. While it was initially developed for regulatory interactions, it can be used for extension with any relationships provided in our XGMML linkset format. We provide some of those CyTargetLinker linksets on our website. You can download these network files from the CyTargetLinker website or create your own. Check out our tutorials on the website to learn how to use CyTargetLinker.

4.0.1

Works with Cytoscape 3.6

Apps that depend on this release

Release Notes

* automation bug fixed

4.0.0

Works with Cytoscape 3.6

Release Notes

* new automation feature * renaming of RegIN to Linkset

3.0.1

Works with Cytoscape 3.0

Apps that depend on this release

Release Notes

Bug fixes: * colors on buttons to change edge color should now be visible on all operating systems * automated layout will not be applied when the extended network is bigger than 10.000 nodes - often crashes Cytoscape

3.0.0

Works with Cytoscape 3.0

Release Notes

CyTargetLinker is now released for Cytoscape 3.0. * Extension of biological networks with regulatory interactions * CyTargetLinker control panel contains drop down box with all networks that have been extended with CyTargetLinker * Hide/Show functionality * Overlap threshold functionality * Added nodes are colored based on biological type (targets are shaped as hexagons and regulators as rounded rectangles)

CYTOSCAPE 3

Version 4.0.1

License Click here

Released 15 Apr 2018

Works with Cytoscape 3.6

Download Stats Click here