A C D E F G H I J L M N O P R S T U V

A

actionPerformed(ActionEvent) - Method in class ai.vital.cytoscape.app.internal.MenuAction

actionPerformed(ActionEvent) - Method in class ai.vital.cytoscape.app.internal.tabs.ServicePanel

addCheckChangeEventListener(JCheckBoxTree.CheckChangeEventListener) - Method in class ai.vital.cytoscape.app.internal.panels.JCheckBoxTree

addLoginListener(Application.LoginListener) - Method in class ai.vital.cytoscape.app.internal.app.Application

ai.vital.cytoscape.app.internal - package ai.vital.cytoscape.app.internal

ai.vital.cytoscape.app.internal.app - package ai.vital.cytoscape.app.internal.app

ai.vital.cytoscape.app.internal.dnd - package ai.vital.cytoscape.app.internal.dnd

ai.vital.cytoscape.app.internal.model - package ai.vital.cytoscape.app.internal.model

ai.vital.cytoscape.app.internal.panels - package ai.vital.cytoscape.app.internal.panels

ai.vital.cytoscape.app.internal.tabs - package ai.vital.cytoscape.app.internal.tabs

ai.vital.cytoscape.app.internal.tasks - package ai.vital.cytoscape.app.internal.tasks

Application - Class in ai.vital.cytoscape.app.internal.app

Application.HierarchyNode - Class in ai.vital.cytoscape.app.internal.app

Application.LoginListener - Interface in ai.vital.cytoscape.app.internal.app

applyVisualStyle(CyNetworkView) - Static method in class ai.vital.cytoscape.app.internal.model.VisualStyleUtils

Attributes - Class in ai.vital.cytoscape.app.internal.model

Attributes() - Constructor for class ai.vital.cytoscape.app.internal.model.Attributes

C

cachedClass2PropertyName - Static variable in class ai.vital.cytoscape.app.internal.model.PropertyUtils

cancel() - Method in class ai.vital.cytoscape.app.internal.tasks.ExpandNodesTask

canImport(JComponent, DataFlavor[]) - Method in class ai.vital.cytoscape.app.internal.dnd.VitalTransferHandler

CheckChangeEvent(Object) - Constructor for class ai.vital.cytoscape.app.internal.panels.JCheckBoxTree.CheckChangeEvent

checkStateChanged(JCheckBoxTree.CheckChangeEvent) - Method in interface ai.vital.cytoscape.app.internal.panels.JCheckBoxTree.CheckChangeEventListener

checkSubTree(TreePath, boolean) - Method in class ai.vital.cytoscape.app.internal.panels.JCheckBoxTree

children - Variable in class ai.vital.cytoscape.app.internal.app.Application.HierarchyNode

clearListeners() - Static method in class ai.vital.cytoscape.app.internal.panels.NetworkListPanel

cls - Variable in class ai.vital.cytoscape.app.internal.app.Application.HierarchyNode

ConnectionTab - Class in ai.vital.cytoscape.app.internal.tabs

ConnectionTab() - Constructor for class ai.vital.cytoscape.app.internal.tabs.ConnectionTab

CONNECTOR_NODE_SIZE - Static variable in class ai.vital.cytoscape.app.internal.model.Utils

constants() - Static method in class ai.vital.cytoscape.app.internal.model.Attributes

convertDate(Long) - Static method in class ai.vital.cytoscape.app.internal.model.TimeUtils

convertDate(Date) - Static method in class ai.vital.cytoscape.app.internal.model.TimeUtils

convertDate(String) - Static method in class ai.vital.cytoscape.app.internal.model.TimeUtils

createNodeAndSetAttributes(CyNetwork, VITAL_Node) - Static method in class ai.vital.cytoscape.app.internal.model.Utils

createNodeForURI(CyNetwork, String) - Static method in class ai.vital.cytoscape.app.internal.model.Utils

createTaskIterator(View<CyNode>, CyNetworkView) - Method in class ai.vital.cytoscape.app.internal.tasks.ExpandNodesViewTaskFactory

createTransferable(JComponent) - Method in class ai.vital.cytoscape.app.internal.dnd.ListTransferHandler

CyActivator - Class in ai.vital.cytoscape.app.internal

CyActivator() - Constructor for class ai.vital.cytoscape.app.internal.CyActivator

D

DatascriptItem(Datascript) - Constructor for class ai.vital.cytoscape.app.internal.tabs.DatascriptsTab.DatascriptItem

DatascriptsTab - Class in ai.vital.cytoscape.app.internal.tabs

DatascriptsTab() - Constructor for class ai.vital.cytoscape.app.internal.tabs.DatascriptsTab

DatascriptsTab.DatascriptItem - Class in ai.vital.cytoscape.app.internal.tabs

DatascriptsTab.ResultsDialog - Class in ai.vital.cytoscape.app.internal.tabs

E

edgeDestinationURI - Static variable in class ai.vital.cytoscape.app.internal.model.Attributes

edgeSourceURI - Static variable in class ai.vital.cytoscape.app.internal.model.Attributes

edgeTypeURI - Static variable in class ai.vital.cytoscape.app.internal.model.Attributes

edgeURIExistsInTheNetwork(CyNetwork, String) - Static method in class ai.vital.cytoscape.app.internal.model.Utils

entity - Variable in class ai.vital.cytoscape.app.internal.dnd.ListElementWrapper

executeDatascript(String, Map<String, Object>) - Method in class ai.vital.cytoscape.app.internal.app.Application

ExpandNodesTask - Class in ai.vital.cytoscape.app.internal.tasks

ExpandNodesTask() - Constructor for class ai.vital.cytoscape.app.internal.tasks.ExpandNodesTask

ExpandNodesTask(View<CyNode>, int) - Constructor for class ai.vital.cytoscape.app.internal.tasks.ExpandNodesTask

ExpandNodesViewTaskFactory - Class in ai.vital.cytoscape.app.internal.tasks

ExpandNodesViewTaskFactory() - Constructor for class ai.vital.cytoscape.app.internal.tasks.ExpandNodesViewTaskFactory

F

filterGraphMatch(ResultList, Map<String, GraphObject>) - Static method in class ai.vital.cytoscape.app.internal.app.Application

flavor - Static variable in class ai.vital.cytoscape.app.internal.dnd.VitalEntityFlavor

G

get() - Static method in class ai.vital.cytoscape.app.internal.app.Application

getAllEdgeTypes() - Static method in class ai.vital.cytoscape.app.internal.app.VitalAICytoscapePlugin

getAllEdgeTypes() - Method in class ai.vital.cytoscape.app.internal.tabs.PathsTab

getAllNodeTypes() - Static method in class ai.vital.cytoscape.app.internal.app.VitalAICytoscapePlugin

getAllNodeTypes() - Method in class ai.vital.cytoscape.app.internal.tabs.PathsTab

getApplicationManager() - Static method in class ai.vital.cytoscape.app.internal.app.VitalAICytoscapePlugin

getCheckedPaths() - Method in class ai.vital.cytoscape.app.internal.panels.JCheckBoxTree

getClassHierarchy(Class<? extends GraphObject>, boolean) - Method in class ai.vital.cytoscape.app.internal.app.Application

getComponent() - Method in class ai.vital.cytoscape.app.internal.tabs.MainTabsPanel

getConnections(String, String, int, int) - Method in class ai.vital.cytoscape.app.internal.app.Application

getCurrentNetwork() - Static method in class ai.vital.cytoscape.app.internal.app.VitalAICytoscapePlugin

getCurrentNetworkView() - Static method in class ai.vital.cytoscape.app.internal.app.VitalAICytoscapePlugin

getCyEdgeForURIInTheNetwork(CyNetwork, String) - Static method in class ai.vital.cytoscape.app.internal.model.Utils

getCyNodeForIdentifier(CyNetwork, Long) - Static method in class ai.vital.cytoscape.app.internal.model.Utils

getCyNodeForURIInTheNetwork(CyNetwork, String) - Static method in class ai.vital.cytoscape.app.internal.model.Utils

getCytoPanelName() - Method in class ai.vital.cytoscape.app.internal.tabs.MainTabsPanel

getDatascripts() - Method in class ai.vital.cytoscape.app.internal.app.Application

getDepth() - Static method in class ai.vital.cytoscape.app.internal.app.VitalAICytoscapePlugin

getDepth() - Method in class ai.vital.cytoscape.app.internal.tabs.PathsTab

getDialogTaskManager() - Static method in class ai.vital.cytoscape.app.internal.app.VitalAICytoscapePlugin

getEdgeAttributesMap() - Static method in class ai.vital.cytoscape.app.internal.model.Attributes

getEndpointType() - Method in class ai.vital.cytoscape.app.internal.app.Application

getEntity() - Method in class ai.vital.cytoscape.app.internal.dnd.ListElementWrapper

getEntity(String) - Method in class ai.vital.cytoscape.app.internal.tabs.SearchTab

getEventHelper() - Static method in class ai.vital.cytoscape.app.internal.app.VitalAICytoscapePlugin

getExpansionDirection() - Static method in class ai.vital.cytoscape.app.internal.app.VitalAICytoscapePlugin

getExpansionDirection() - Method in class ai.vital.cytoscape.app.internal.tabs.PathsTab

getIcon() - Method in class ai.vital.cytoscape.app.internal.tabs.MainTabsPanel

getKamadaKawaiLayout() - Static method in class ai.vital.cytoscape.app.internal.model.Utils

getLayoutAlgorithmManager() - Static method in class ai.vital.cytoscape.app.internal.app.VitalAICytoscapePlugin

getNetworkFactory() - Static method in class ai.vital.cytoscape.app.internal.app.VitalAICytoscapePlugin

getNetworkManager() - Static method in class ai.vital.cytoscape.app.internal.app.VitalAICytoscapePlugin

getNetworkView(CyNetwork) - Static method in class ai.vital.cytoscape.app.internal.app.VitalAICytoscapePlugin

getNetworkViewFactory() - Static method in class ai.vital.cytoscape.app.internal.app.VitalAICytoscapePlugin

getNetworkViewManager() - Static method in class ai.vital.cytoscape.app.internal.app.VitalAICytoscapePlugin

getNodeAttributesMap() - Static method in class ai.vital.cytoscape.app.internal.model.Attributes

getParentEdgeTypeURI() - Method in class ai.vital.cytoscape.app.internal.dnd.ListElementWrapper

getPathSegments() - Static method in class ai.vital.cytoscape.app.internal.app.VitalAICytoscapePlugin

getPrimeURL() - Method in class ai.vital.cytoscape.app.internal.app.Application

getSegmentsPanel() - Method in class ai.vital.cytoscape.app.internal.tabs.PathsTab

getSegmentsPanel() - Method in class ai.vital.cytoscape.app.internal.tabs.SearchTab

getSelectedEdgeTypes() - Static method in class ai.vital.cytoscape.app.internal.app.VitalAICytoscapePlugin

getSelectedEdgeTypes() - Method in class ai.vital.cytoscape.app.internal.tabs.PathsTab

getSelectedNetwork() - Method in class ai.vital.cytoscape.app.internal.panels.NetworkListPanel

getSelectedNodeTypes() - Static method in class ai.vital.cytoscape.app.internal.app.VitalAICytoscapePlugin

getSelectedNodeTypes() - Method in class ai.vital.cytoscape.app.internal.tabs.PathsTab

getSelectedSegments() - Method in class ai.vital.cytoscape.app.internal.panels.SegmentsPanel

getServiceSegments() - Method in class ai.vital.cytoscape.app.internal.app.Application

getSourceActions(JComponent) - Method in class ai.vital.cytoscape.app.internal.dnd.ListTransferHandler

getTitle() - Method in class ai.vital.cytoscape.app.internal.tabs.MainTabsPanel

getTitle() - Method in class ai.vital.cytoscape.app.internal.tasks.ExpandNodesTask

getTransferData(DataFlavor) - Method in class ai.vital.cytoscape.app.internal.dnd.VitalTransferable

getTransferDataFlavors() - Method in class ai.vital.cytoscape.app.internal.dnd.VitalTransferable

getVitalService() - Method in class ai.vital.cytoscape.app.internal.app.Application

GO_BIOLOGICAL_PROCESS - Static variable in class ai.vital.cytoscape.app.internal.model.Attributes

GO_CELLULAR_COMPONENT - Static variable in class ai.vital.cytoscape.app.internal.model.Attributes

GO_MOLECULAR_FUNCTION - Static variable in class ai.vital.cytoscape.app.internal.model.Attributes

H

halt() - Method in class ai.vital.cytoscape.app.internal.tasks.ExpandNodesTask

handleEvent(NetworkAddedEvent) - Method in class ai.vital.cytoscape.app.internal.app.NetworkListener

handleEvent(NetworkDestroyedEvent) - Method in class ai.vital.cytoscape.app.internal.app.NetworkListener

handleEvent(NetworkViewDestroyedEvent) - Method in class ai.vital.cytoscape.app.internal.app.NetworkListener

handleEvent(NetworkViewAddedEvent) - Method in class ai.vital.cytoscape.app.internal.app.NetworkListener

HierarchyNode() - Constructor for class ai.vital.cytoscape.app.internal.app.Application.HierarchyNode

I

importData(JComponent, Transferable) - Method in class ai.vital.cytoscape.app.internal.dnd.VitalTransferHandler

init() - Static method in class ai.vital.cytoscape.app.internal.app.Application

init(VisualMappingManager, VisualStyleFactory, VisualMappingFunctionFactory, VisualMappingFunctionFactory, VisualMappingFunctionFactory) - Static method in class ai.vital.cytoscape.app.internal.model.VisualStyleUtils

initForTests(VitalService) - Static method in class ai.vital.cytoscape.app.internal.app.Application

isDataFlavorSupported(DataFlavor) - Method in class ai.vital.cytoscape.app.internal.dnd.VitalTransferable

isExpandUsingSynonyms() - Method in class ai.vital.cytoscape.app.internal.app.Application

isSelectedPartially(TreePath) - Method in class ai.vital.cytoscape.app.internal.panels.JCheckBoxTree

itemStateChanged(ItemEvent) - Method in class ai.vital.cytoscape.app.internal.panels.NetworkListPanel

itemStateChanged(ItemEvent) - Method in class ai.vital.cytoscape.app.internal.tabs.SearchTab

J

JCheckBoxTree - Class in ai.vital.cytoscape.app.internal.panels

Source: http://stackoverflow.com/questions/21847411/java-swing-need-a-good-quality-developed-jtree-with-checkboxes

JCheckBoxTree() - Constructor for class ai.vital.cytoscape.app.internal.panels.JCheckBoxTree

JCheckBoxTree.CheckChangeEvent - Class in ai.vital.cytoscape.app.internal.panels

JCheckBoxTree.CheckChangeEventListener - Interface in ai.vital.cytoscape.app.internal.panels

JCheckBoxTree.Main - Class in ai.vital.cytoscape.app.internal.panels

L

ListElementWrapper - Class in ai.vital.cytoscape.app.internal.dnd

ListElementWrapper(VITAL_Node, String, String) - Constructor for class ai.vital.cytoscape.app.internal.dnd.ListElementWrapper

listenerList - Variable in class ai.vital.cytoscape.app.internal.panels.JCheckBoxTree

ListTransferHandler - Class in ai.vital.cytoscape.app.internal.dnd

ListTransferHandler(JList) - Constructor for class ai.vital.cytoscape.app.internal.dnd.ListTransferHandler

login(VitalService) - Method in class ai.vital.cytoscape.app.internal.app.Application

LoginPanel - Class in ai.vital.cytoscape.app.internal.tabs

LoginPanel() - Constructor for class ai.vital.cytoscape.app.internal.tabs.LoginPanel

logout() - Method in class ai.vital.cytoscape.app.internal.app.Application

M

main(String[]) - Static method in class ai.vital.cytoscape.app.internal.panels.JCheckBoxTree

Main() - Constructor for class ai.vital.cytoscape.app.internal.panels.JCheckBoxTree.Main

main(String[]) - Static method in class ai.vital.cytoscape.app.internal.panels.SegmentsPanel

main(String[]) - Static method in class ai.vital.cytoscape.app.internal.tabs.DatascriptsTab

MainTabsPanel - Class in ai.vital.cytoscape.app.internal.tabs

MainTabsPanel() - Constructor for class ai.vital.cytoscape.app.internal.tabs.MainTabsPanel

marked - Static variable in class ai.vital.cytoscape.app.internal.model.Attributes

MARKED_ONLY - Static variable in class ai.vital.cytoscape.app.internal.tasks.ExpandNodesTask

MenuAction - Class in ai.vital.cytoscape.app.internal

Creates a new menu item under Apps menu section.

MenuAction(CyApplicationManager, String) - Constructor for class ai.vital.cytoscape.app.internal.MenuAction

modificationDate - Static variable in class ai.vital.cytoscape.app.internal.model.Attributes

N

name - Static variable in class ai.vital.cytoscape.app.internal.model.Attributes

NETWORK_ONLY - Static variable in class ai.vital.cytoscape.app.internal.tasks.ExpandNodesTask

NetworkListener - Class in ai.vital.cytoscape.app.internal.app

NetworkListener() - Constructor for class ai.vital.cytoscape.app.internal.app.NetworkListener

NetworkListPanel - Class in ai.vital.cytoscape.app.internal.panels

NetworkListPanel(boolean) - Constructor for class ai.vital.cytoscape.app.internal.panels.NetworkListPanel

nodeTypeURI - Static variable in class ai.vital.cytoscape.app.internal.model.Attributes

nodeURIExistsInTheNetwork(CyNetwork, String) - Static method in class ai.vital.cytoscape.app.internal.model.Utils

NORMAL - Static variable in class ai.vital.cytoscape.app.internal.tasks.ExpandNodesTask

notifyNetworkListPanels(String) - Static method in class ai.vital.cytoscape.app.internal.panels.NetworkListPanel

O

onLogin() - Method in interface ai.vital.cytoscape.app.internal.app.Application.LoginListener

onLogin() - Method in class ai.vital.cytoscape.app.internal.app.VitalAICytoscapePlugin

onLogin() - Method in class ai.vital.cytoscape.app.internal.tabs.ConnectionTab

onLogin() - Method in class ai.vital.cytoscape.app.internal.tabs.LoginPanel

onLogin() - Method in class ai.vital.cytoscape.app.internal.tabs.ServicePanel

onLogout() - Method in interface ai.vital.cytoscape.app.internal.app.Application.LoginListener

onLogout() - Method in class ai.vital.cytoscape.app.internal.app.VitalAICytoscapePlugin

onLogout() - Method in class ai.vital.cytoscape.app.internal.tabs.ConnectionTab

onLogout() - Method in class ai.vital.cytoscape.app.internal.tabs.LoginPanel

onLogout() - Method in class ai.vital.cytoscape.app.internal.tabs.ServicePanel

onRadioChanged() - Method in class ai.vital.cytoscape.app.internal.tabs.DatascriptsTab

P

parentEdgeTypeURI - Variable in class ai.vital.cytoscape.app.internal.dnd.ListElementWrapper

PathsTab - Class in ai.vital.cytoscape.app.internal.tabs

PathsTab() - Constructor for class ai.vital.cytoscape.app.internal.tabs.PathsTab

PathsTab.ExpansionDirection - Enum in ai.vital.cytoscape.app.internal.tabs

placeNodesEdgesInTheNetwork(CyNetwork, VITAL_Node[], VITAL_Edge[]) - Static method in class ai.vital.cytoscape.app.internal.model.Utils

placeNodesInTheNetwork(CyNetwork, List<GraphObject>) - Static method in class ai.vital.cytoscape.app.internal.model.Utils

placeNodesInTheNetwork(CyNetwork, GraphObject[]) - Static method in class ai.vital.cytoscape.app.internal.model.Utils

processNode(View<CyNode>, CyNetwork, CyNetworkView, HashSet<Long>, List<GraphObject>, boolean) - Method in class ai.vital.cytoscape.app.internal.tasks.ExpandNodesTask

propertyChange(PropertyChangeEvent) - Method in class ai.vital.cytoscape.app.internal.app.VitalAICytoscapePlugin

PropertyItem(String, String, PropertyMetadata) - Constructor for class ai.vital.cytoscape.app.internal.tabs.SearchTab.PropertyItem

PropertyUtils - Class in ai.vital.cytoscape.app.internal.model

PropertyUtils() - Constructor for class ai.vital.cytoscape.app.internal.model.PropertyUtils

R

registerServiceX(Object, Class<?>, Properties) - Method in class ai.vital.cytoscape.app.internal.CyActivator

relationsCount - Static variable in class ai.vital.cytoscape.app.internal.model.Attributes

removeCheckChangeEventListener(JCheckBoxTree.CheckChangeEventListener) - Method in class ai.vital.cytoscape.app.internal.panels.JCheckBoxTree

removeLoginListener(Application.LoginListener) - Method in class ai.vital.cytoscape.app.internal.app.Application

resolveName(GraphObject) - Static method in class ai.vital.cytoscape.app.internal.model.PropertyUtils

ResultsDialog(DatascriptsTab.DatascriptItem, ResultList) - Constructor for class ai.vital.cytoscape.app.internal.tabs.DatascriptsTab.ResultsDialog

run() - Method in class ai.vital.cytoscape.app.internal.app.VitalAICytoscapePlugin

run() - Method in class ai.vital.cytoscape.app.internal.tasks.ExpandNodesTask

run(TaskMonitor) - Method in class ai.vital.cytoscape.app.internal.tasks.ExpandNodesTask

runDatascript() - Method in class ai.vital.cytoscape.app.internal.tabs.DatascriptsTab

S

scope - Static variable in class ai.vital.cytoscape.app.internal.model.Attributes

score - Static variable in class ai.vital.cytoscape.app.internal.model.Attributes

search(VitalSelectQuery) - Method in class ai.vital.cytoscape.app.internal.app.Application

SearchTab - Class in ai.vital.cytoscape.app.internal.tabs

SearchTab() - Constructor for class ai.vital.cytoscape.app.internal.tabs.SearchTab

SearchTab.PropertyItem - Class in ai.vital.cytoscape.app.internal.tabs

segment - Static variable in class ai.vital.cytoscape.app.internal.model.Attributes

SegmentsPanel - Class in ai.vital.cytoscape.app.internal.panels

SegmentsPanel() - Constructor for class ai.vital.cytoscape.app.internal.panels.SegmentsPanel

selectRootNode() - Method in class ai.vital.cytoscape.app.internal.panels.JCheckBoxTree

ServicePanel - Class in ai.vital.cytoscape.app.internal.tabs

ServicePanel() - Constructor for class ai.vital.cytoscape.app.internal.tabs.ServicePanel

setConnectionURL(String) - Method in class ai.vital.cytoscape.app.internal.tabs.LoginPanel

setConnectionURL(String) - Method in class ai.vital.cytoscape.app.internal.tabs.ServicePanel

setEdgeAttributes(CyNetwork, CyEdge, VITAL_Edge) - Static method in class ai.vital.cytoscape.app.internal.model.Utils

setModel(TreeModel) - Method in class ai.vital.cytoscape.app.internal.panels.JCheckBoxTree

setNodeAttributes(CyNetwork, CyNode, VITAL_Node) - Static method in class ai.vital.cytoscape.app.internal.model.Utils

setParentEdgeTypeURI(String) - Method in class ai.vital.cytoscape.app.internal.dnd.ListElementWrapper

setSegmentsList(List<VitalSegment>) - Method in class ai.vital.cytoscape.app.internal.panels.SegmentsPanel

setSpecialLabel(String) - Method in class ai.vital.cytoscape.app.internal.dnd.ListElementWrapper

setTaskMonitor(TaskMonitor) - Method in class ai.vital.cytoscape.app.internal.tasks.ExpandNodesTask

setURL(String) - Method in class ai.vital.cytoscape.app.internal.tabs.ConnectionTab

setVitalService(VitalService) - Method in class ai.vital.cytoscape.app.internal.app.Application

simpleDateFormat - Static variable in class ai.vital.cytoscape.app.internal.model.TimeUtils

start(BundleContext) - Method in class ai.vital.cytoscape.app.internal.CyActivator

style - Static variable in class ai.vital.cytoscape.app.internal.model.VisualStyleUtils

T

timestamp - Static variable in class ai.vital.cytoscape.app.internal.model.Attributes

TimeUtils - Class in ai.vital.cytoscape.app.internal.model

TimeUtils() - Constructor for class ai.vital.cytoscape.app.internal.model.TimeUtils

toString() - Method in class ai.vital.cytoscape.app.internal.app.Application.HierarchyNode

toString() - Method in class ai.vital.cytoscape.app.internal.dnd.ListElementWrapper

toString() - Method in class ai.vital.cytoscape.app.internal.tabs.DatascriptsTab.DatascriptItem

toString() - Method in class ai.vital.cytoscape.app.internal.tabs.SearchTab.PropertyItem

type - Static variable in class ai.vital.cytoscape.app.internal.model.Attributes

U

updateImportButton() - Method in class ai.vital.cytoscape.app.internal.tabs.SearchTab

updateNetworksList(Set<CyNetwork>, String) - Method in class ai.vital.cytoscape.app.internal.panels.NetworkListPanel

updatePredecessorsWithCheckMode(TreePath, boolean) - Method in class ai.vital.cytoscape.app.internal.panels.JCheckBoxTree

updateSearchButton() - Method in class ai.vital.cytoscape.app.internal.tabs.SearchTab

URI - Variable in class ai.vital.cytoscape.app.internal.app.Application.HierarchyNode

uri - Static variable in class ai.vital.cytoscape.app.internal.model.Attributes

Utils - Class in ai.vital.cytoscape.app.internal.model

Utils() - Constructor for class ai.vital.cytoscape.app.internal.model.Utils

V

valueChanged(ListSelectionEvent) - Method in class ai.vital.cytoscape.app.internal.tabs.SearchTab

valueOf(String) - Static method in enum ai.vital.cytoscape.app.internal.tabs.PathsTab.ExpansionDirection

Returns the enum constant of this type with the specified name.

values() - Static method in enum ai.vital.cytoscape.app.internal.tabs.PathsTab.ExpansionDirection

Returns an array containing the constants of this enum type, in the order they are declared.

virtualConnector_NodeTypeID - Static variable in class ai.vital.cytoscape.app.internal.model.Utils

visualStyleFactoryServiceRef - Static variable in class ai.vital.cytoscape.app.internal.model.VisualStyleUtils

VisualStyleUtils - Class in ai.vital.cytoscape.app.internal.model

VisualStyleUtils() - Constructor for class ai.vital.cytoscape.app.internal.model.VisualStyleUtils

VitalAICytoscapePlugin - Class in ai.vital.cytoscape.app.internal.app

VitalAICytoscapePlugin(CyActivator, CyApplicationManager, CyNetworkFactory, CyNetworkViewFactory, CyNetworkManager, CyNetworkViewManager, CyEventHelper, CyLayoutAlgorithmManager, DialogTaskManager, BundleContext) - Constructor for class ai.vital.cytoscape.app.internal.app.VitalAICytoscapePlugin

VitalEntityFlavor - Class in ai.vital.cytoscape.app.internal.dnd

VitalEntityFlavor() - Constructor for class ai.vital.cytoscape.app.internal.dnd.VitalEntityFlavor

VitalTransferable - Class in ai.vital.cytoscape.app.internal.dnd

VitalTransferable(GraphObject[]) - Constructor for class ai.vital.cytoscape.app.internal.dnd.VitalTransferable

VitalTransferHandler - Class in ai.vital.cytoscape.app.internal.dnd

VitalTransferHandler() - Constructor for class ai.vital.cytoscape.app.internal.dnd.VitalTransferHandler

vitalVisualStyleName - Static variable in class ai.vital.cytoscape.app.internal.model.Utils

vmfFactoryContinious - Static variable in class ai.vital.cytoscape.app.internal.model.VisualStyleUtils

vmfFactoryDiscrete - Static variable in class ai.vital.cytoscape.app.internal.model.VisualStyleUtils

vmfFactoryPassthrough - Static variable in class ai.vital.cytoscape.app.internal.model.VisualStyleUtils

vmmServiceRef - Static variable in class ai.vital.cytoscape.app.internal.model.VisualStyleUtils

A C D E F G H I J L M N O P R S T U V