ai.vital.cytoscape.app.internal.model

Class Utils

java.lang.Object

ai.vital.cytoscape.app.internal.model.Utils

public class Utils
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
static double	CONNECTOR_NODE_SIZE
static String	virtualConnector_NodeTypeID
static String	vitalVisualStyleName

Constructor Summary

Constructors

Constructor and Description
Utils()

Method Summary

Modifier and Type	Method and Description
static org.cytoscape.model.CyNode	createNodeAndSetAttributes(org.cytoscape.model.CyNetwork cyNetwork, ai.vital.vitalsigns.model.VITAL_Node nodeBase)
static org.cytoscape.model.CyNode	createNodeForURI(org.cytoscape.model.CyNetwork cyNetwork, String uri)
static boolean	edgeURIExistsInTheNetwork(org.cytoscape.model.CyNetwork cyNetwork, String uri)
static org.cytoscape.model.CyEdge	getCyEdgeForURIInTheNetwork(org.cytoscape.model.CyNetwork cyNetwork, String edgeURI)
static org.cytoscape.model.CyNode	getCyNodeForIdentifier(org.cytoscape.model.CyNetwork cyNetwork, Long identifier)
static org.cytoscape.model.CyNode	getCyNodeForURIInTheNetwork(org.cytoscape.model.CyNetwork cyNetwork, String uri)
static org.cytoscape.view.layout.CyLayoutAlgorithm	getKamadaKawaiLayout()
static boolean	nodeURIExistsInTheNetwork(org.cytoscape.model.CyNetwork cyNetwork, String uri)
static void	placeNodesEdgesInTheNetwork(org.cytoscape.model.CyNetwork cyNetwork, ai.vital.vitalsigns.model.VITAL_Node[] nodes, ai.vital.vitalsigns.model.VITAL_Edge[] edges)
static void	placeNodesInTheNetwork(org.cytoscape.model.CyNetwork cyNetwork, ai.vital.vitalsigns.model.GraphObject[] entities)
static void	placeNodesInTheNetwork(org.cytoscape.model.CyNetwork cyNetwork, List<ai.vital.vitalsigns.model.GraphObject> entities)
static void	setEdgeAttributes(org.cytoscape.model.CyNetwork cyNet, org.cytoscape.model.CyEdge edge, ai.vital.vitalsigns.model.VITAL_Edge relation)
static void	setNodeAttributes(org.cytoscape.model.CyNetwork network, org.cytoscape.model.CyNode node, ai.vital.vitalsigns.model.VITAL_Node entity)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

virtualConnector_NodeTypeID

public static String virtualConnector_NodeTypeID

vitalVisualStyleName

public static final String vitalVisualStyleName

See Also:

Constant Field Values

CONNECTOR_NODE_SIZE

public static final double CONNECTOR_NODE_SIZE

See Also:

Constant Field Values

Constructor Detail

Utils

public Utils()

Method Detail

placeNodesInTheNetwork

public static void placeNodesInTheNetwork(org.cytoscape.model.CyNetwork cyNetwork,
                                          List<ai.vital.vitalsigns.model.GraphObject> entities)

placeNodesInTheNetwork

public static void placeNodesInTheNetwork(org.cytoscape.model.CyNetwork cyNetwork,
                                          ai.vital.vitalsigns.model.GraphObject[] entities)

placeNodesEdgesInTheNetwork

public static void placeNodesEdgesInTheNetwork(org.cytoscape.model.CyNetwork cyNetwork,
                                               ai.vital.vitalsigns.model.VITAL_Node[] nodes,
                                               ai.vital.vitalsigns.model.VITAL_Edge[] edges)

createNodeAndSetAttributes

public static org.cytoscape.model.CyNode createNodeAndSetAttributes(org.cytoscape.model.CyNetwork cyNetwork,
                                                                    ai.vital.vitalsigns.model.VITAL_Node nodeBase)

createNodeForURI

public static org.cytoscape.model.CyNode createNodeForURI(org.cytoscape.model.CyNetwork cyNetwork,
                                                          String uri)

setNodeAttributes

public static void setNodeAttributes(org.cytoscape.model.CyNetwork network,
                                     org.cytoscape.model.CyNode node,
                                     ai.vital.vitalsigns.model.VITAL_Node entity)

nodeURIExistsInTheNetwork

public static boolean nodeURIExistsInTheNetwork(org.cytoscape.model.CyNetwork cyNetwork,
                                                String uri)

edgeURIExistsInTheNetwork

public static boolean edgeURIExistsInTheNetwork(org.cytoscape.model.CyNetwork cyNetwork,
                                                String uri)

getCyEdgeForURIInTheNetwork

public static org.cytoscape.model.CyEdge getCyEdgeForURIInTheNetwork(org.cytoscape.model.CyNetwork cyNetwork,
                                                                     String edgeURI)

getCyNodeForURIInTheNetwork

public static org.cytoscape.model.CyNode getCyNodeForURIInTheNetwork(org.cytoscape.model.CyNetwork cyNetwork,
                                                                     String uri)

getCyNodeForIdentifier

public static org.cytoscape.model.CyNode getCyNodeForIdentifier(org.cytoscape.model.CyNetwork cyNetwork,
                                                                Long identifier)

setEdgeAttributes

public static void setEdgeAttributes(org.cytoscape.model.CyNetwork cyNet,
                                     org.cytoscape.model.CyEdge edge,
                                     ai.vital.vitalsigns.model.VITAL_Edge relation)

getKamadaKawaiLayout

public static org.cytoscape.view.layout.CyLayoutAlgorithm getKamadaKawaiLayout()