vn.edu.tlu.hatrang.autoRWRMTN.internal.model

Class MyUtils

java.lang.Object

vn.edu.tlu.hatrang.autoRWRMTN.internal.model.MyUtils

All Implemented Interfaces:

org.cytoscape.work.TaskObserver

public class MyUtils
extends Object
implements org.cytoscape.work.TaskObserver

Constructor Summary

Constructors

Constructor and Description
MyUtils(org.cytoscape.service.util.CyServiceRegistrar serviceRegistrar)

Method Summary

Modifier and Type	Method and Description
void	allFinished(org.cytoscape.work.FinishStatus arg0)
void	executeCommand(String namespace, String command, Map<String,Object> args, org.cytoscape.work.TaskObserver observer)
ArrayList<RankedResult>	fillPhenotypeTable(String diseaseName, org.cytoscape.model.CyNetworkFactory networkFactory, org.cytoscape.model.CyNetworkManager networkManager)
Map<String,Double>	getNodeScore()
Map<Integer,String>	getRankNode()
<S> S	getService(Class<S> serviceClass)
void	rankDisease(String DiseaseName, float backProb, float subnetWeight, ArrayList<String> arrUserMiRNA)
void	taskFinished(org.cytoscape.work.ObservableTask arg0)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MyUtils

public MyUtils(org.cytoscape.service.util.CyServiceRegistrar serviceRegistrar)

Method Detail

allFinished

public void allFinished(org.cytoscape.work.FinishStatus arg0)

Specified by:

allFinished in interface org.cytoscape.work.TaskObserver

getNodeScore

public Map<String,Double> getNodeScore()

getRankNode

public Map<Integer,String> getRankNode()

rankDisease

public void rankDisease(String DiseaseName,
                        float backProb,
                        float subnetWeight,
                        ArrayList<String> arrUserMiRNA)

fillPhenotypeTable

public ArrayList<RankedResult> fillPhenotypeTable(String diseaseName,
                                                  org.cytoscape.model.CyNetworkFactory networkFactory,
                                                  org.cytoscape.model.CyNetworkManager networkManager)

taskFinished

public void taskFinished(org.cytoscape.work.ObservableTask arg0)

Specified by:

taskFinished in interface org.cytoscape.work.TaskObserver

executeCommand

public void executeCommand(String namespace,
                           String command,
                           Map<String,Object> args,
                           org.cytoscape.work.TaskObserver observer)

getService

public <S> S getService(Class<S> serviceClass)