org.cytoscape.opencl.layout

Class CLLayoutTask

java.lang.Object

org.cytoscape.work.AbstractTask

org.cytoscape.view.layout.AbstractLayoutTask

org.cytoscape.view.layout.AbstractPartitionLayoutTask

org.cytoscape.view.layout.AbstractParallelPartitionLayoutTask

org.cytoscape.opencl.layout.CLLayoutTask

All Implemented Interfaces:

org.cytoscape.work.Task

public class CLLayoutTask
extends org.cytoscape.view.layout.AbstractParallelPartitionLayoutTask

This class implements the Prefuse force-directed layout algorithm using OpenCL.

See Also:

Prefuse web site

Field Summary

Fields inherited from class org.cytoscape.view.layout.AbstractPartitionLayoutTask

current_size, current_start, edgeWeighter, incr, partitionList, taskMonitor, total_nodes

Fields inherited from class org.cytoscape.view.layout.AbstractLayoutTask

LAYOUT_ALGORITHM, layoutAttribute, networkView, nodesToLayOut, recenter, undo

Fields inherited from class org.cytoscape.work.AbstractTask

cancelled

Constructor Summary

Constructors

Constructor and Description
CLLayoutTask(String displayName, org.cytoscape.view.model.CyNetworkView networkView, Set<org.cytoscape.view.model.View<org.cytoscape.model.CyNode>> nodesToLayOut, CLLayoutContext context, String attrName, org.cytoscape.work.undo.UndoSupport undo) Creates a new ForceDirectedLayout object.

Method Summary

Modifier and Type	Method and Description
void	layoutPartition(org.cytoscape.view.layout.LayoutPartition partition)
String	toString()

Methods inherited from class org.cytoscape.view.layout.AbstractParallelPartitionLayoutTask

doLayout

Methods inherited from class org.cytoscape.view.layout.AbstractPartitionLayoutTask

setTaskStatus

Methods inherited from class org.cytoscape.view.layout.AbstractLayoutTask

run

Methods inherited from class org.cytoscape.work.AbstractTask

cancel, insertTasksAfterCurrentTask, insertTasksAfterCurrentTask, setTaskIterator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

CLLayoutTask

public CLLayoutTask(String displayName,
                    org.cytoscape.view.model.CyNetworkView networkView,
                    Set<org.cytoscape.view.model.View<org.cytoscape.model.CyNode>> nodesToLayOut,
                    CLLayoutContext context,
                    String attrName,
                    org.cytoscape.work.undo.UndoSupport undo)

Creates a new ForceDirectedLayout object.

Method Detail

layoutPartition

public void layoutPartition(org.cytoscape.view.layout.LayoutPartition partition)

Specified by:

layoutPartition in class org.cytoscape.view.layout.AbstractPartitionLayoutTask

toString

public String toString()

Overrides:

toString in class Object