org.cytoscape.cyni
Class AbstractCyniAlgorithmContext

java.lang.Object
  org.cytoscape.cyni.AbstractCyniAlgorithmContext

public class AbstractCyniAlgorithmContext
extends Object

Field Summary

protected boolean

selectedOnly Indicates that only selected rows should be used.

Constructor Summary

AbstractCyniAlgorithmContext(boolean supportsSelectedOnly)
The constructor

Method Summary

List<String>	getAllAttributesNumbers(org.cytoscape.model.CyTable table) Returns a list of the names of the columns that contains numbers(Float,Integer,Double)
List<String>	getAllAttributesStrings(org.cytoscape.model.CyTable table) Returns a list of the names of the columns that contains strings
void	getAttributesList(List<String> attributeList, org.cytoscape.model.CyTable table, String prefix, Object type) Fills a list with names of columns that has the same type that the one requested
void	setSelectedOnly(boolean selectedOnly) Set the flag that indicates that this algorithm should only operate on the currently selected rows.
boolean	useSelectedOnly() Returns whether the algorithm allows working with only selected rows

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

selectedOnly

protected boolean selectedOnly

Indicates that only selected rows should be used.

Constructor Detail

AbstractCyniAlgorithmContext

public AbstractCyniAlgorithmContext(boolean supportsSelectedOnly)

The constructor

Method Detail

setSelectedOnly

public void setSelectedOnly(boolean selectedOnly)

Set the flag that indicates that this algorithm should only operate on the currently selected rows.

Parameters:

selectedOnly - set to "true" if the algorithm should only apply to selected rows only

useSelectedOnly

public boolean useSelectedOnly()

Returns whether the algorithm allows working with only selected rows

Returns:

True if the algorithm allows working with only selected rows

getAttributesList

public void getAttributesList(List<String> attributeList,
                              org.cytoscape.model.CyTable table,
                              String prefix,
                              Object type)

Fills a list with names of columns that has the same type that the one requested

Parameters:

attributeList - The list of names of columns.

table - The CyTable to get the names of attributes.

prefix - The prefix that could be added to the name of columns

type - The type of the columns

getAllAttributesStrings

public List<String> getAllAttributesStrings(org.cytoscape.model.CyTable table)

Returns a list of the names of the columns that contains strings

Parameters:

table - The CyTable to get the names of attributes.

Returns:

The list of column names

getAllAttributesNumbers

public List<String> getAllAttributesNumbers(org.cytoscape.model.CyTable table)

Returns a list of the names of the columns that contains numbers(Float,Integer,Double)

Parameters:

table - The CyTable to get the names of attributes.

Returns:

The list of column names