es.imim.DISGENET.validation

Class NodeValidation

java.lang.Object

es.imim.DISGENET.validation.NodeValidation

public class NodeValidation
extends Object

The DISGENET Cytoscape App is designed to visualize, query, and analyze a network representation of DISGENET data.

Copyright (C) 2024 MEDBIOINFORMATICS SOLUTIONS SL

This file is part of the DISGENET Cytoscape App. The DISGENET Cytoscape App is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or any later version.

The DISGENET Cytoscape App is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with the DISGENET Cytoscape App. If not, see http://www.gnu.org/licenses/.

Field Summary

Fields

Modifier and Type	Field and Description
static String	DISEASE_CUI_REGEX
static String	VARIANT_SNP_REGEX

Constructor Summary

Constructors

Constructor and Description
NodeValidation()

Method Summary

Modifier and Type	Method and Description
static String	filterNodeType(String nodeEntry) Filters the given string and checks for one of the following matches, gene symbol, disease cui or variant snp.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

DISEASE_CUI_REGEX

public static final String DISEASE_CUI_REGEX

See Also:

Constant Field Values

VARIANT_SNP_REGEX

public static final String VARIANT_SNP_REGEX

See Also:

Constant Field Values

Constructor Detail

NodeValidation

public NodeValidation()

Method Detail

filterNodeType

public static String filterNodeType(String nodeEntry)

Filters the given string and checks for one of the following matches, gene symbol, disease cui or variant snp.

Parameters:

nodeEntry - the string to check.

Returns:

the type of the node as a string