Uses of Class
es.imim.DISGENET.exceptions.DisGeNetException
Package
Description
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Uses of DisGeNetException in es.imim.DISGENET.database
Modifier and TypeMethodDescriptionDatabase.getDiseaseAttributes(GuiParameters curParams)
Database.getGeneAttributes(GuiParameters curParams)
Database.getGeneDiseaseNetworkBySrc(GuiParameters curParams)
Database.getVariantDiseaseNetworkBySrc(GuiParameters curParams)
static void
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Uses of DisGeNetException in es.imim.DISGENET.internal.annotation
Modifier and TypeMethodDescriptionAnnotateDiseasesTask.buildSearchField()
AnnotateGenesTask.buildSearchField()
AnnotateVariantsTask.buildSearchField()
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Uses of DisGeNetException in es.imim.DISGENET.internal.tables
Modifier and TypeMethodDescriptionvoid
DisGeNetCyTableBase.fillNodeColumns(org.cytoscape.model.CyTable cyTable, Map<String,Long> attributes)
void
DisGeNetCyTableDisease.fillNodeColumns(org.cytoscape.model.CyTable disTable, Map<String,Long> suids)
Fills the disease related columns with the data retrived from the current search parameters.void
DisGeNetCyTableGene.fillNodeColumns(org.cytoscape.model.CyTable geneTable, Map<String,Long> suids)
Fills the gene related columns with the data retrived from the current search parameters.void
DisGeNETCyTableNodeInterface.fillNodeColumns(org.cytoscape.model.CyTable cyTable, Map<String,Long> suids)
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Uses of DisGeNetException in es.imim.DISGENET.network
Modifier and TypeMethodDescriptionvoid
NetworkBuilder.buildDiseaseNet(GuiParameters curParams)
Generic function to create disease networkvoid
NetworkBuilder.buildGeneDiseaseNet(GuiParameters curParams)
Get the gene/disease net information from the database and call generic function to build netvoid
NetworkBuilder.buildGeneNet(GuiParameters curParams)
Generic function to create gene networkvoid
NetworkBuilder.buildNet(List<String> list1, List<String> list2, List<String> nrCommonEntities, String src, GuiParameters params)
Builds a new disease-disease or gene-gene network.void
NetworkBuilder.buildNetWithEdgeAttributes(ArrayList<String> intList, ArrayList<String> disList, ArrayList<String> genList, ArrayList<String> scoreList, ArrayList<String> eiList, ArrayList<String> yearList, ArrayList<String> yearFinalList, GuiParameters params)
void
NetworkBuilder.buildVariantDiseaseNet(GuiParameters curParams)
Get the variant/disease net information from the database and call generic function to build netNetworkBuilder.expandGeneDiseaseNet(GuiParameters curParams, Map<String,Long> nodeMap)
Expands the selected gene disease network using the selected nodes as reference.NetworkBuilder.expandVariantDiseaseNet(GuiParameters curParams, Map<String,Long> nodeMap)
Expands the selected variant disease network using the selected nodes as reference.void
NetworkBuilder.showVariantNetWithGenes()
Calls the method to expand a variant disease network and updates the view.