es.imim.DisGeNET.validation

Class NetworkValidation

java.lang.Object

es.imim.DisGeNET.validation.NetworkValidation

public class NetworkValidation
extends Object

Constructor Summary

Constructors

Constructor and Description
NetworkValidation()

Method Summary

Modifier and Type	Method and Description
static boolean	isExpandedWithGenes(org.cytoscape.model.CyNetwork cyNetwork) Checks if the the variant network is already expanded.
static boolean	isForeignNet(org.cytoscape.model.CyNetwork cyNetwork) Checks if the current network is original DisGeNET network or not.
static boolean	isProjectionNet(org.cytoscape.model.CyNetwork cyNetwork, String interaction)
static boolean	isVariantNet(org.cytoscape.model.CyNetwork cyNetwork) Checks if the current network is a variant-disease network.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NetworkValidation

public NetworkValidation()

Method Detail

isVariantNet

public static boolean isVariantNet(org.cytoscape.model.CyNetwork cyNetwork)

Checks if the current network is a variant-disease network.

Parameters:

cyNetwork - the network to check.

Returns:

true in case the network is a variant network or false in case there's no network or isn't a variant.

isProjectionNet

public static boolean isProjectionNet(org.cytoscape.model.CyNetwork cyNetwork,
                                      String interaction)

isExpandedWithGenes

public static boolean isExpandedWithGenes(org.cytoscape.model.CyNetwork cyNetwork)

Checks if the the variant network is already expanded.

Parameters:

cyNetwork - the network to check.

Returns:

true in case the variant network us already expanded false in case not.

isForeignNet

public static boolean isForeignNet(org.cytoscape.model.CyNetwork cyNetwork)

Checks if the current network is original DisGeNET network or not.

Parameters:

cyNetwork - the network to check the origin.

Returns:

true in case the network was formed in disgenet or false in case not.