Constant Field Values

Contents

• es.imim.*

es.imim.*

es.imim.DisGeNET.database.DatabaseProps

Modifier and Type	Constant Field	Value
public static final String	DISEASE_CODE_REGEX	"^C[0-9]{7}$"
public static final String	DISEASE_SEARCH_REGEX	"(\'C[0-9]{7}\',)*\'C[0-9]{7}\'"
public static final String	GENE_SEARCH_REGEX	"(\\d+,)*\\d+"
public static final String	VARIANT_STRING_SEARCH	"(\'(rs)\\d+\',)*\'(rs)\\d+\'"

es.imim.DisGeNET.gui.GuiProps

Modifier and Type	Constant Field	Value
public static final String	COLOR_NODES_BUTTON_TEXT	"Colour nodes with disease class"
public static final String	COLOR_NODES_BUTTON_TOOLTIP	"Colours the network according to disease class"
public static final String	CREATE_NET_BUTTON_TEXT	"Create Network"
public static final String	CREATE_NET_BUTTON_TOOLTIP	"Creates network with selected parameters"
public static final String	DIS_PROJ_LABEL	"Select Disease Class"
public static final String	DIS_PROJ_SEARCH_FIELD	""
public static final String	DIS_PROJ_SEARCH_LABEL	"Search Disease"
public static final String	DIS_PROJ_SOURCE_LABEL	"Select Source"
public static final String	DIS_PROJ_TAB_TITLE	"Disease Projections"
public static final String	EI_HIGH_LABEL	"to"
public static final String	EI_LOW_LABEL	"EI from"
public static final String	EL_LABEL	"Evidence Level"
public static final String	EXIT_BUTTON_TEXT	"Exit Plugin"
public static final String	GENE_DIS_ASSO_LABEL	"Select Association Type"
public static final String	GENE_DIS_CLASS_LABEL	"Select Disease Class"
public static final String	GENE_DIS_LOW_SCORE_LABEL	"Score from"
public static final String	GENE_DIS_SEARCH_DIS_LABEL	"Search Disease"
public static final String	GENE_DIS_SEARCH_GENE_LABEL	"Search Gene"
public static final String	GENE_DIS_SEARCH_TEXT	""
public static final String	GENE_DIS_SOURCE_LABEL	"Select Source"
public static final String	GENE_DIS_TAB_TITLE	"Gene Disease Network"
public static final String	GENE_DIS_UP_SCORE_LABEL	"to"
public static final String	GENE_PROJ_LABEL	"Select Disease Class"
public static final String	GENE_PROJ_SEARCH_FIELD	""
public static final String	GENE_PROJ_SEARCH_LABEL	"Search Gene"
public static final String	GENE_PROJ_SOURCE_LABEL	"Select Source"
public static final String	GENE_PROJ_TAB_TITLE	"Gene Projections"
public static final String	REMOVE_COLOR_BUTTON_TEXT	"Remove disease class colours"
public static final String	REMOVE_COLOR_BUTTON_TOOLTIP	"Removes the disease class colours and restores the default DisGeNET style"
public static final String	VARIANT_DIS_ASSO_LABEL	"Select Association Type"
public static final String	VARIANT_DIS_CLASS_LABEL	"Select Disease Class"
public static final String	VARIANT_DIS_LOW_SCORE_LABEL	"Score from"
public static final String	VARIANT_DIS_SEARCH_DIS_LABEL	"Search Disease"
public static final String	VARIANT_DIS_SEARCH_GEN_LABEL	"Search Gene"
public static final String	VARIANT_DIS_SEARCH_TEXT	""
public static final String	VARIANT_DIS_SEARCH_VAR_LABEL	"Search Variant"
public static final String	VARIANT_DIS_SOURCE_LABEL	"Select Source"
public static final String	VARIANT_DIS_TAB_TITLE	"Variant Disease Network"
public static final String	VARIANT_DIS_UP_SCORE_LABEL	"to"
public static final String	VARIANT_VAR_GEN_CHECKBOX_LABEL	"Show associated genes"
public static final String	VARIANT_VAR_GEN_CHECKBOX_TOOLTIP	"Shows the gene nodes associated to the variants"

es.imim.DisGeNET.internal.enrichment.GeneEnrichment

Modifier and Type	Constant Field	Value
public static final String	colGenesBG	"bg ratio"
public static final String	colGenesRatio	"gene ratio"
public static final String	colGenesSUID	"nodes.SUID"
public static final String	colID	"disease id"
public static final String	colListGenes	"intersection EntrezIds"
public static final String	colListSymbols	"intersection Symbols"
public static final String	colName	"disease name"
public static final String	colPvalue	"p-value"
public static final String	colPvalueAdj	"adjusted p-value"
public static final String	colSource	"disease name"
public static final String	enrichmentURL	"https://www.disgenet.org/api/enrichment/genes"

es.imim.DisGeNET.internal.linkout.LinkoutProperties

Modifier and Type	Constant Field	Value
public static final String	DISEASE_LINKOUT_URL	"http://linkedlifedata.com/resource/umls/id/"
public static final String	GENE_LINKOUT_URL	"https://www.ncbi.nlm.nih.gov/gene/"
public static final String	PUBMED_LINKOUT_URL	"https://www.ncbi.nlm.nih.gov/pubmed/?term="
public static final String	VARIANT_LINKOUT_URL	"https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?rs="

es.imim.DisGeNET.internal.utils.IconUtils

Modifier and Type	Constant Field	Value
public static final String	DISEASE_LAYER	"\ue908"
public static final String	EM_ICON_LAYER_1	"\ue900"
public static final String	EM_ICON_LAYER_2	"\ue901"
public static final String	EM_ICON_LAYER_3	"\ue901"
public static final String	ENRICH_LAYER	"\ue909"
public static final String	PUBMED_LAYER	"\ue90a"
public static final String	STITCH_LAYER	"\ue90b"
public static final String	STRING_ICON	"\ue903"
public static final String	STRING_ICON_LAYER_1	"\ue904"
public static final String	STRING_ICON_LAYER_2	"\ue905"
public static final String	STRING_ICON_LAYER_3	"\ue906"
public static final String	STRING_ICON_LAYER_4	"\ue907"
public static final String	STRING_LAYER	"\ue90c"

es.imim.DisGeNET.search.MemComboBox

Modifier and Type	Constant Field	Value
public static final int	MAX_MEM_LEN	50

es.imim.DisGeNET.validation.NodeValidation

Modifier and Type	Constant Field	Value
public static final String	DISEASE_CUI_REGEX	"^C[0-9]{7}$"
public static final String	VARIANT_SNP_REGEX	"rs\\d+"