public class CyActivator
extends org.cytoscape.service.util.AbstractCyActivator
Modifier and Type | Field and Description |
---|---|
static org.cytoscape.view.layout.CyLayoutAlgorithmManager |
layoutAlgoManager |
Constructor and Description |
---|
CyActivator() |
Modifier and Type | Method and Description |
---|---|
org.cytoscape.application.CyApplicationManager |
getApplicationManagerService() |
org.cytoscape.view.presentation.property.values.CyColumnIdentifierFactory |
getColumnIdentifierFactory() |
org.osgi.framework.BundleContext |
getContext() |
CustomChartListener |
getCustomGraphics() |
org.cytoscape.application.CyApplicationManager |
getCyApplicationManager() |
org.cytoscape.model.CyTableFactory |
getCyTableFactory() |
org.cytoscape.model.CyTableManager |
getCyTableManager() |
org.cytoscape.application.swing.CySwingApplication |
getDesktopService() |
org.cytoscape.work.swing.DialogTaskManager |
getDialogTaskManagerService() |
Database |
getDisGeNETdb() |
org.cytoscape.model.CyTable |
getDisgenetNodeAttributesTable() |
Map<Long,org.cytoscape.model.CyTable> |
getEnrichmentTables() |
org.cytoscape.work.TaskIterator |
getGlobalTaskIterator() |
static CyActivator |
getInstance() |
org.cytoscape.model.CyNetworkTableManager |
getNetTableMgr() |
org.cytoscape.model.CyNetworkFactory |
getNetworkFactoryService() |
org.cytoscape.model.CyNetworkManager |
getNetworkManagerService() |
org.cytoscape.view.model.CyNetworkViewFactory |
getNetworkViewFactoryService() |
org.cytoscape.view.model.CyNetworkViewManager |
getNetworkViewManagerService() |
org.cytoscape.service.util.CyServiceRegistrar |
getServiceRegistrar() |
ShowEnrichmentPanelTaskFactory |
getShowEnrichmentFactory() |
org.cytoscape.work.SynchronousTaskManager |
getSynchTaskManagerService() |
org.cytoscape.model.CyTableFactory |
getTableFactoryService() |
org.cytoscape.work.TaskManager |
getTaskManagerService() |
org.cytoscape.view.vizmap.VisualMappingManager |
getVisualMappingMgr() |
org.cytoscape.view.vizmap.VisualStyleFactory |
getVisualStyleFactor() |
void |
setColumnIdentifierFactory(org.cytoscape.view.presentation.property.values.CyColumnIdentifierFactory columnIdentifierFactory) |
void |
setContext(org.osgi.framework.BundleContext context) |
void |
setCustomGraphics(CustomChartListener customGraphics) |
void |
setCyApplicationManager(org.cytoscape.application.CyApplicationManager cyApplicationManager) |
void |
setCyTableFactory(org.cytoscape.model.CyTableFactory cyTableFactory) |
void |
setCyTableManager(org.cytoscape.model.CyTableManager cyTableManager) |
void |
setDisGeNETdb(Database db) |
void |
setDisgenetNodeAttributesTable(org.cytoscape.model.CyTable table) |
void |
setNetTableMgr(org.cytoscape.model.CyNetworkTableManager netTableMgr) |
void |
setServiceRegistrar(org.cytoscape.service.util.CyServiceRegistrar serviceRegistrar) |
void |
start(org.osgi.framework.BundleContext context) |
void |
unregister_disgenet_panel(DisGeNETCytoPanel disgenetCytoPanel) |
getService, getService, registerAllServices, registerAllServices, registerService, registerService, registerServiceListener, registerServiceListener, registerServiceListener, registerServiceListener, registerServiceListener, registerServiceListener, shutDown, stop
public static org.cytoscape.view.layout.CyLayoutAlgorithmManager layoutAlgoManager
public void start(org.osgi.framework.BundleContext context) throws Exception
Exception
public org.cytoscape.model.CyNetworkTableManager getNetTableMgr()
public void setNetTableMgr(org.cytoscape.model.CyNetworkTableManager netTableMgr)
public org.cytoscape.view.presentation.property.values.CyColumnIdentifierFactory getColumnIdentifierFactory()
public void setColumnIdentifierFactory(org.cytoscape.view.presentation.property.values.CyColumnIdentifierFactory columnIdentifierFactory)
public org.cytoscape.model.CyTableManager getCyTableManager()
public void setCyTableManager(org.cytoscape.model.CyTableManager cyTableManager)
public org.cytoscape.model.CyTableFactory getCyTableFactory()
public void setCyTableFactory(org.cytoscape.model.CyTableFactory cyTableFactory)
public org.cytoscape.application.CyApplicationManager getCyApplicationManager()
public void setCyApplicationManager(org.cytoscape.application.CyApplicationManager cyApplicationManager)
public CustomChartListener getCustomGraphics()
public void setCustomGraphics(CustomChartListener customGraphics)
public org.cytoscape.service.util.CyServiceRegistrar getServiceRegistrar()
public org.osgi.framework.BundleContext getContext()
public void setContext(org.osgi.framework.BundleContext context)
public void setServiceRegistrar(org.cytoscape.service.util.CyServiceRegistrar serviceRegistrar)
public static CyActivator getInstance()
public org.cytoscape.application.swing.CySwingApplication getDesktopService()
public org.cytoscape.model.CyTableFactory getTableFactoryService()
public org.cytoscape.model.CyNetworkFactory getNetworkFactoryService()
public org.cytoscape.model.CyNetworkManager getNetworkManagerService()
public org.cytoscape.view.model.CyNetworkViewFactory getNetworkViewFactoryService()
public org.cytoscape.application.CyApplicationManager getApplicationManagerService()
public org.cytoscape.view.model.CyNetworkViewManager getNetworkViewManagerService()
public org.cytoscape.work.TaskIterator getGlobalTaskIterator()
public org.cytoscape.work.swing.DialogTaskManager getDialogTaskManagerService()
public org.cytoscape.work.TaskManager getTaskManagerService()
public org.cytoscape.work.SynchronousTaskManager getSynchTaskManagerService()
public void unregister_disgenet_panel(DisGeNETCytoPanel disgenetCytoPanel)
public void setDisgenetNodeAttributesTable(org.cytoscape.model.CyTable table)
public org.cytoscape.model.CyTable getDisgenetNodeAttributesTable()
public org.cytoscape.view.vizmap.VisualMappingManager getVisualMappingMgr()
public org.cytoscape.view.vizmap.VisualStyleFactory getVisualStyleFactor()
public void setDisGeNETdb(Database db)
public Database getDisGeNETdb()
public ShowEnrichmentPanelTaskFactory getShowEnrichmentFactory()
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