cyTransFinder

Class WebserviceTask_motifTypeParser

java.lang.Object

org.cytoscape.work.AbstractTask

cyTransFinder.WebserviceTask_motifTypeParser

All Implemented Interfaces:

org.cytoscape.work.Task

public class WebserviceTask_motifTypeParser
extends org.cytoscape.work.AbstractTask

Field Summary

Fields

Modifier and Type	Field and Description
protected String	fullSimple
protected String[]	motif
protected MyCytoPanel	myCytoPanel
protected File	myfile
protected String	myFunction

Fields inherited from class org.cytoscape.work.AbstractTask

cancelled

Constructor Summary

Constructors

Constructor and Description
WebserviceTask_motifTypeParser(File FILE, CyActivator CY_ACTIVATOR, org.cytoscape.view.model.CyNetworkView MYVIEW, MyCytoPanel myCytoPanel, String FULLSIMPLE)

Method Summary

Modifier and Type	Method and Description
String[]	getMotifCUSTOM()
String[]	getMotifmiRNAT1()
String[]	getMotifmiRNAT2()
String[]	getMotifT0()
String[]	getMotifT1()
String[]	getMotifT2()
void	run(org.cytoscape.work.TaskMonitor taskMonitor)

Methods inherited from class org.cytoscape.work.AbstractTask

cancel, insertTasksAfterCurrentTask, insertTasksAfterCurrentTask, setTaskIterator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

myCytoPanel

protected MyCytoPanel myCytoPanel

myFunction

protected String myFunction

motif

protected String[] motif

myfile

protected File myfile

fullSimple

protected String fullSimple

Constructor Detail

WebserviceTask_motifTypeParser

public WebserviceTask_motifTypeParser(File FILE,
                                      CyActivator CY_ACTIVATOR,
                                      org.cytoscape.view.model.CyNetworkView MYVIEW,
                                      MyCytoPanel myCytoPanel,
                                      String FULLSIMPLE)

Method Detail

getMotifCUSTOM

public String[] getMotifCUSTOM()

getMotifT0

public String[] getMotifT0()

getMotifT1

public String[] getMotifT1()

getMotifT2

public String[] getMotifT2()

getMotifmiRNAT1

public String[] getMotifmiRNAT1()

getMotifmiRNAT2

public String[] getMotifmiRNAT2()

run

public void run(org.cytoscape.work.TaskMonitor taskMonitor)
         throws Exception

Specified by:

run in interface org.cytoscape.work.Task

Specified by:

run in class org.cytoscape.work.AbstractTask

Throws:

Exception