cyTransFinder

Class WebserviceTask_mirIAD_InterGenic

java.lang.Object

org.cytoscape.work.AbstractTask

cyTransFinder.WebserviceTask_mirIAD_InterGenic

All Implemented Interfaces:

org.cytoscape.work.Task

public class WebserviceTask_mirIAD_InterGenic
extends org.cytoscape.work.AbstractTask

Field Summary

Fields

Modifier and Type	Field and Description
protected Document	document
protected String	geneID
protected List<Map<String,String>>	IntronicMirnaList

Fields inherited from class org.cytoscape.work.AbstractTask

cancelled

Constructor Summary

Constructors

Constructor and Description
WebserviceTask_mirIAD_InterGenic(CyActivator CY_ACTIVATOR, Set<org.cytoscape.model.CyNode> GENE_NODES, MyCytoPanel myCytoPanel, String ENHANCE_TYPE, int ITER)

Method Summary

Modifier and Type	Method and Description
protected BufferedReader	downloadZip()
List<Map<String,String>>	getIntronicMirnaList()
void	run(org.cytoscape.work.TaskMonitor taskMonitor)
protected BufferedReader	unZipIt(InputStream zipfile)

Methods inherited from class org.cytoscape.work.AbstractTask

cancel, insertTasksAfterCurrentTask, insertTasksAfterCurrentTask, setTaskIterator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

IntronicMirnaList

protected List<Map<String,String>> IntronicMirnaList

document

protected Document document

geneID

protected String geneID

Constructor Detail

WebserviceTask_mirIAD_InterGenic

public WebserviceTask_mirIAD_InterGenic(CyActivator CY_ACTIVATOR,
                                        Set<org.cytoscape.model.CyNode> GENE_NODES,
                                        MyCytoPanel myCytoPanel,
                                        String ENHANCE_TYPE,
                                        int ITER)

Method Detail

downloadZip

protected BufferedReader downloadZip()

unZipIt

protected BufferedReader unZipIt(InputStream zipfile)

run

public void run(org.cytoscape.work.TaskMonitor taskMonitor)
         throws Exception

Specified by:

run in interface org.cytoscape.work.Task

Specified by:

run in class org.cytoscape.work.AbstractTask

Throws:

Exception

getIntronicMirnaList

public List<Map<String,String>> getIntronicMirnaList()