cyTransFinder

Class WebserviceTask_UCSC

java.lang.Object

org.cytoscape.work.AbstractTask

cyTransFinder.WebserviceTask_UCSC

All Implemented Interfaces:

org.cytoscape.work.Task

public class WebserviceTask_UCSC
extends org.cytoscape.work.AbstractTask

Field Summary

Fields

Modifier and Type	Field and Description
protected Document	document
protected String	geneID
protected List<Map<String,String>>	mirnaList
protected MyCytoPanel	myCytoPanel

Fields inherited from class org.cytoscape.work.AbstractTask

cancelled

Constructor Summary

Constructors

Constructor and Description
WebserviceTask_UCSC(String ORGANISM, Set<org.cytoscape.model.CyNode> GENE_NODES, CyActivator CY_ACTIVATOR, org.cytoscape.view.model.CyNetworkView MYVIEW, MyCytoPanel myCytoPanel)

Method Summary

Modifier and Type	Method and Description
void	retrieveAllIntronicMirna(String ORGANISM)
void	run(org.cytoscape.work.TaskMonitor taskMonitor)

Methods inherited from class org.cytoscape.work.AbstractTask

cancel, insertTasksAfterCurrentTask, insertTasksAfterCurrentTask, setTaskIterator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

mirnaList

protected List<Map<String,String>> mirnaList

document

protected Document document

geneID

protected String geneID

myCytoPanel

protected MyCytoPanel myCytoPanel

Constructor Detail

WebserviceTask_UCSC

public WebserviceTask_UCSC(String ORGANISM,
                           Set<org.cytoscape.model.CyNode> GENE_NODES,
                           CyActivator CY_ACTIVATOR,
                           org.cytoscape.view.model.CyNetworkView MYVIEW,
                           MyCytoPanel myCytoPanel)

Method Detail

retrieveAllIntronicMirna

public void retrieveAllIntronicMirna(String ORGANISM)

run

public void run(org.cytoscape.work.TaskMonitor taskMonitor)
         throws Exception

Specified by:

run in interface org.cytoscape.work.Task

Specified by:

run in class org.cytoscape.work.AbstractTask

Throws:

Exception