Uses of Class
fr.systemsbiology.cyni.CyniAlgorithmContext

Uses of CyniAlgorithmContext in fr.systemsbiology.cyni

Methods in fr.systemsbiology.cyni that return CyniAlgorithmContext

CyniAlgorithmContext

CyCyniAlgorithm.createCyniContext(org.cytoscape.model.CyTable table, CyCyniMetricsManager metricsManager, org.cytoscape.work.TunableSetter tunableSetter, Map<String,Object> mparams) Returns a new cyni context object.

Methods in fr.systemsbiology.cyni with parameters of type CyniAlgorithmContext

org.cytoscape.work.TaskIterator

CyCyniAlgorithm.createTaskIterator(CyniAlgorithmContext context, org.cytoscape.model.CyTable table, org.cytoscape.model.CyNetworkFactory networkFactory, org.cytoscape.view.model.CyNetworkViewFactory networkViewFactory, org.cytoscape.model.CyNetworkManager networkManager, org.cytoscape.model.CyNetworkTableManager netTableMgr, org.cytoscape.model.subnetwork.CyRootNetworkManager rootNetMgr, org.cytoscape.view.vizmap.VisualMappingManager vmMgr, org.cytoscape.view.model.CyNetworkViewManager networkViewManager, org.cytoscape.view.layout.CyLayoutAlgorithmManager layoutManager, CyCyniMetricsManager metricsManager) Creates a task iterator containing the cyni tasks.

Constructors in fr.systemsbiology.cyni with parameters of type CyniAlgorithmContext

AbstractCyniTask(String name, CyniAlgorithmContext context)
This Constructor can be used for Cyni tasks that don't need to create a new network such as Discretization or Imputation algorithms

AbstractCyniTask(String name, CyniAlgorithmContext context, org.cytoscape.model.CyNetworkFactory networkFactory, org.cytoscape.view.model.CyNetworkViewFactory networkViewFactory, org.cytoscape.model.CyNetworkManager networkManager, org.cytoscape.view.model.CyNetworkViewManager networkViewManager, org.cytoscape.model.CyNetworkTableManager netTableMgr, org.cytoscape.model.subnetwork.CyRootNetworkManager rootNetMgr, org.cytoscape.view.vizmap.VisualMappingManager visualMapperManager)
Constructor.