A B C E F G H I L M N O P R S T V W

A

addProgram(String, URL, String[], HashMap<String, String>, boolean) - Method in class org.cytoscape.opencl.cycl.CyCLDevice

Compiles a program and its kernels, and stores it for further use.

addressBits - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

assignSystemProperties() - Method in class org.cytoscape.opencl.cycl.CyCLSettingsTask

B

benchmarkScore - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

bestBlockSize - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

bestWarpSize - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

C

cl_char - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_char, in bytes.

cl_char16 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_char16, in bytes

cl_char2 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_char2, in bytes

cl_char4 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_char4, in bytes

cl_char8 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_char8, in bytes

cl_command_queue - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_command_queue, in bytes

cl_context - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_context, in bytes

cl_device_id - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_device_id, in bytes

cl_double - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_double, in bytes.

cl_double16 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_double16, in bytes

cl_double2 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_double2, in bytes

cl_double4 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_double4, in bytes

cl_double8 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_double8, in bytes

cl_event - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_event, in bytes

cl_float - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_float, in bytes.

cl_float16 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_float16, in bytes

cl_float2 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_float2, in bytes

cl_float4 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_float4, in bytes

cl_float8 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_float8, in bytes

cl_half - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_half, in bytes.

cl_int - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_int, in bytes.

cl_int16 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_int16, in bytes

cl_int2 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_int2, in bytes

cl_int4 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_int4, in bytes

cl_int8 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_int8, in bytes

cl_kernel - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_kernel, in bytes

cl_long - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_long, in bytes.

cl_long16 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_long16, in bytes

cl_long2 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_long2, in bytes

cl_long4 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_long4, in bytes

cl_long8 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_long8, in bytes

cl_mem - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_mem, in bytes

cl_platform_id - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_platform_id, in bytes

cl_program - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_program, in bytes

cl_sampler - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_sampler, in bytes

cl_short - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_short, in bytes.

cl_short16 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_short16, in bytes

cl_short2 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_short2, in bytes

cl_short4 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_short4, in bytes

cl_short8 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_short8, in bytes

cl_uchar - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_uchar, in bytes.

cl_uchar16 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_uchar16, in bytes

cl_uchar2 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_uchar2, in bytes

cl_uchar4 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_uchar4, in bytes

cl_uchar8 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_uchar8, in bytes

cl_uint - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_uint, in bytes.

cl_uint16 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_uint16, in bytes

cl_uint2 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_uint2, in bytes

cl_uint4 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_uint4, in bytes

cl_uint8 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_uint8, in bytes

cl_ulong - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_ulong, in bytes.

cl_ulong16 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_ulong16, in bytes

cl_ulong2 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_ulong2, in bytes

cl_ulong4 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_ulong4, in bytes

cl_ulong8 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_ulong8, in bytes

cl_ushort - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_ushort, in bytes.

cl_ushort16 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_ushort16, in bytes

cl_ushort2 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_ushort2, in bytes

cl_ushort4 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_ushort4, in bytes

cl_ushort8 - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a cl_ushort8, in bytes

clockFrequency - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

computeUnits - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

createBuffer(Class<?>, int) - Method in class org.cytoscape.opencl.cycl.CyCLDevice

Allocates memory on this device without filling it with any data.

createBuffer(byte[]) - Method in class org.cytoscape.opencl.cycl.CyCLDevice

Allocates memory on this device and fills it with host data.

createBuffer(short[]) - Method in class org.cytoscape.opencl.cycl.CyCLDevice

Allocates memory on this device and fills it with host data.

createBuffer(int[]) - Method in class org.cytoscape.opencl.cycl.CyCLDevice

Allocates memory on this device and fills it with host data.

createBuffer(long[]) - Method in class org.cytoscape.opencl.cycl.CyCLDevice

Allocates memory on this device and fills it with host data.

createBuffer(float[]) - Method in class org.cytoscape.opencl.cycl.CyCLDevice

Allocates memory on this device and fills it with host data.

createBuffer(double[]) - Method in class org.cytoscape.opencl.cycl.CyCLDevice

Allocates memory on this device and fills it with host data.

createTaskIterator() - Method in class org.cytoscape.opencl.cycl.CyCLSettingsTaskFactory

CyActivator - Class in org.cytoscape.opencl.cycl

CyActivator() - Constructor for class org.cytoscape.opencl.cycl.CyActivator

CyCL - Class in org.cytoscape.opencl.cycl

Central OpenCL service that is initialized on startup and stores all available devices.

CyCL() - Constructor for class org.cytoscape.opencl.cycl.CyCL

CyCLBuffer - Class in org.cytoscape.opencl.cycl

Provides functionality associated with an OpenCL memory object.

CyCLBuffer(CyCLContext, Class<?>, int) - Constructor for class org.cytoscape.opencl.cycl.CyCLBuffer

Allocates [sizeof(type) * elements] bytes in device memory without copying any host data

CyCLBuffer(CyCLContext, byte[]) - Constructor for class org.cytoscape.opencl.cycl.CyCLBuffer

Allocates device memory to fit all elements in data, and copies its contents

CyCLBuffer(CyCLContext, short[]) - Constructor for class org.cytoscape.opencl.cycl.CyCLBuffer

Allocates device memory to fit all elements in data, and copies its contents

CyCLBuffer(CyCLContext, int[]) - Constructor for class org.cytoscape.opencl.cycl.CyCLBuffer

Allocates device memory to fit all elements in data, and copies its contents

CyCLBuffer(CyCLContext, long[]) - Constructor for class org.cytoscape.opencl.cycl.CyCLBuffer

Allocates device memory to fit all elements in data, and copies its contents

CyCLBuffer(CyCLContext, float[]) - Constructor for class org.cytoscape.opencl.cycl.CyCLBuffer

Allocates device memory to fit all elements in data, and copies its contents

CyCLBuffer(CyCLContext, double[]) - Constructor for class org.cytoscape.opencl.cycl.CyCLBuffer

Allocates device memory to fit all elements in data, and copies its contents

CyCLContext - Class in org.cytoscape.opencl.cycl

CyCLContext(CyCLDevice) - Constructor for class org.cytoscape.opencl.cycl.CyCLContext

CyCLDevice - Class in org.cytoscape.opencl.cycl

Represents functionality associated with a single OpenCL device.

CyCLDevice.DeviceTypes - Enum in org.cytoscape.opencl.cycl

CyCLKernel - Class in org.cytoscape.opencl.cycl

CyCLKernel(CyCLContext, CyCLProgram, String) - Constructor for class org.cytoscape.opencl.cycl.CyCLKernel

CyCLLocalSize - Class in org.cytoscape.opencl.cycl

Specifies the amount of local memory in an argument of a kernel call.

CyCLLocalSize(Long) - Constructor for class org.cytoscape.opencl.cycl.CyCLLocalSize

Initializes the object with the specified amount of bytes.

CyCLProgram - Class in org.cytoscape.opencl.cycl

CyCLProgram(CyCLContext, CyCLDevice, URL, String[], HashMap<String, String>, boolean) - Constructor for class org.cytoscape.opencl.cycl.CyCLProgram

CyCLSettingsTask - Class in org.cytoscape.opencl.cycl

CyCLSettingsTask(CyProperty<Properties>) - Constructor for class org.cytoscape.opencl.cycl.CyCLSettingsTask

CyCLSettingsTaskFactory - Class in org.cytoscape.opencl.cycl

CyCLSettingsTaskFactory(CyProperty<Properties>) - Constructor for class org.cytoscape.opencl.cycl.CyCLSettingsTaskFactory

E

elementSize() - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Returns the number of bytes associated with the CyCLBuffer's element type.

execute(long[], long[], Object...) - Method in class org.cytoscape.opencl.cycl.CyCLKernel

F

finalize() - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Frees all device memory associated with the buffer.

finalize() - Method in class org.cytoscape.opencl.cycl.CyCLContext

finalize() - Method in class org.cytoscape.opencl.cycl.CyCLDevice

Releases all native resources associated with the device.

finalize() - Method in class org.cytoscape.opencl.cycl.CyCLKernel

finalize() - Method in class org.cytoscape.opencl.cycl.CyCLProgram

finishQueue() - Method in class org.cytoscape.opencl.cycl.CyCLDevice

Pauses the calling thread until all items in the device's command queue have been finished.

forceAddProgram(String, URL, String[], HashMap<String, String>, boolean) - Method in class org.cytoscape.opencl.cycl.CyCLDevice

Compiles a program and its kernels, and stores it, possibly replacing (and destroying) an old instance.

free() - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Frees all device memory associated with the buffer.

G

getAll(String) - Static method in class org.cytoscape.opencl.cycl.CyCLDevice

Initializes all devices present in the system, removes duplicates (same device, different platforms), and returns them as a list.

getBestBlockSize(long) - Method in class org.cytoscape.opencl.cycl.CyCLDevice

Suggests an optimal block (work item) size for the given global item count.

getContext() - Method in class org.cytoscape.opencl.cycl.CyCLContext

getDevice() - Method in class org.cytoscape.opencl.cycl.CyCLDevice

Gets the underlying LWJGL device ID.

getDevices() - Static method in class org.cytoscape.opencl.cycl.CyCL

getDeviceSpecificDefines() - Method in class org.cytoscape.opencl.cycl.CyCLDevice

Gets a dictionary of device-specific values that will be defined in the compiled program

getFromDevice(byte[], int, int) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Copies data from device to host memory.

getFromDevice(short[], int, int) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Copies data from device to host memory.

getFromDevice(int[], int, int) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Copies data from device to host memory.

getFromDevice(long[], int, int) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Copies data from device to host memory.

getFromDevice(float[], int, int) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Copies data from device to host memory.

getFromDevice(double[], int, int) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Copies data from device to host memory.

getFromDevice(byte[]) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Copies data from device to host memory.

getFromDevice(short[]) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Copies data from device to host memory.

getFromDevice(int[]) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Copies data from device to host memory.

getFromDevice(long[]) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Copies data from device to host memory.

getFromDevice(float[]) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Copies data from device to host memory.

getFromDevice(double[]) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Copies data from device to host memory.

getKernel(String) - Method in class org.cytoscape.opencl.cycl.CyCLProgram

getMemObject() - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Gets the underlying memory object.

getPlatform() - Method in class org.cytoscape.opencl.cycl.CyCLDevice

Gets the underlying LWJGL platform ID.

getProgram(String) - Method in class org.cytoscape.opencl.cycl.CyCLDevice

Attempts to find a pre-compiled program with the given name.

getProgram() - Method in class org.cytoscape.opencl.cycl.CyCLProgram

getQueue() - Method in class org.cytoscape.opencl.cycl.CyCLContext

getSize() - Method in class org.cytoscape.opencl.cycl.CyCLLocalSize

Gets the amount of bytes specified by the object.

getTitle() - Method in class org.cytoscape.opencl.cycl.CyCLSettingsTask

getValidationState(Appendable) - Method in class org.cytoscape.opencl.cycl.CyCLSettingsTask

globalMemSize - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

H

hasProgram(String) - Method in class org.cytoscape.opencl.cycl.CyCLDevice

Determines if a program with the given name has already been compiled and stored.

I

image2DMaxSize - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

image3DMaxSize - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

initialize(CyApplicationConfiguration, CyProperty<Properties>) - Static method in class org.cytoscape.opencl.cycl.CyCL

Loads all necessary native libraries, initializes LWJGL and populates the device list.

initSync - Static variable in class org.cytoscape.opencl.cycl.CyCL

L

localMemSize - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

localMemType - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

M

makePreferred(String) - Static method in class org.cytoscape.opencl.cycl.CyCL

maxConstBufferSize - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

maxMallocSize - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

maxReadImageArgs - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

maxWorkGroupSize - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

maxWorkItemSizes - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

maxWriteImageArgs - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

N

name - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

O

org.cytoscape.opencl.cycl - package org.cytoscape.opencl.cycl

P

platformName - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

POINTER - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a native pointer, in bytes

preferredNameList - Variable in class org.cytoscape.opencl.cycl.CyCLSettingsTask

prefWidthChar - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

prefWidthDouble - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

prefWidthFloat - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

prefWidthInt - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

prefWidthLong - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

prefWidthShort - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

R

run(TaskMonitor) - Method in class org.cytoscape.opencl.cycl.CyCLSettingsTask

S

setFromDevice(CyCLBuffer, long, long, long) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Copies data from another device buffer to this one.

setFromDevice(CyCLBuffer) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Copies data from another device buffer to this one.

setFromHost(byte[], int, int) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Copies data from host to device memory.

setFromHost(short[], int, int) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Copies data from host to device memory.

setFromHost(int[], int, int) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Copies data from host to device memory.

setFromHost(long[], int, int) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Copies data from host to device memory.

setFromHost(float[], int, int) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Copies data from host to device memory.

setFromHost(double[], int, int) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Copies data from host to device memory.

setFromHost(byte[]) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Copies data from host to device memory.

setFromHost(short[]) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Copies data from host to device memory.

setFromHost(int[]) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Copies data from host to device memory.

setFromHost(long[]) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Copies data from host to device memory.

setFromHost(float[]) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Copies data from host to device memory.

setFromHost(double[]) - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Copies data from host to device memory.

size_t - Static variable in class org.cytoscape.opencl.cycl.Sizeof

Size of a size_t, in bytes

sizeInBytes() - Method in class org.cytoscape.opencl.cycl.CyCLBuffer

Returns the overall buffer size in bytes.

Sizeof - Class in org.cytoscape.opencl.cycl

Size constants for scalar and vector data types.

start(BundleContext) - Method in class org.cytoscape.opencl.cycl.CyActivator

supportsECC - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

supportsImages - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

sync - Static variable in class org.cytoscape.opencl.cycl.CyCL

T

type - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

V

valueOf(String) - Static method in enum org.cytoscape.opencl.cycl.CyCLDevice.DeviceTypes

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.cytoscape.opencl.cycl.CyCLDevice.DeviceTypes

Returns an array containing the constants of this enum type, in the order they are declared.

vendor - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

version - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

W

workItemDimensions - Variable in class org.cytoscape.opencl.cycl.CyCLDevice

A B C E F G H I L M N O P R S T V W