SPNConverter

Tool to convert graphs into GraphML format
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The signaling Petri net (SPN) simulator, designed to provide insights into the trends of molecules’ activity-levels in response to an external stimulus, contributes to the systems biology necessity of analyzing the dynamics of large-scale cellular networks. Implemented into the freely available software, BioLayout *Express* 3D, the simulator is publically available and easy to use, providing the input files are prepared in the GraphML format. SPNConverter enables users to automatically convert networks for analysis with the SPN simulator from the standard systems biology markup language (SBML) to Graphml format. For more information, please visit our website [http://www.picb.ac.cn/ClinicalGenomicNTW/SPNConverter.html]
CYTOSCAPE 2

Version 1.0

Released 19 Jul 2013

Works with Cytoscape 2.8

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