KEGGscape

File reader and pathway visualizer for KEGG XML (KGML) files
# KEGGScape (formerly known as KGMLReader for Cytoscape 2.*). KEGGscape is an app to provide comprehensive support for KEGG database. ### Quick Start https://github.com/idekerlab/KEGGscape/wiki/How-to-import-KGML-with-KEGGscape ## About version 0.8.x KEGGscape 0.8.x has REST API. You can import KEGG pathway to Cytoscape by requesting http://localhost:1234/keggscape/v1/THE_KEGG_PATHWAY_ID for example you can import http://www.genome.jp/dbget-bin/www_bget?eco00010 by requesting http://localhost:1234/keggscape/v1/eco00010

0.8.0

Works with Cytoscape 3.6


0.7.3

Works with Cytoscape 3.6


0.7.0

Works with Cytoscape 3.1


0.5.6

Works with Cytoscape 3.1

Release Notes

add signaling edge attributes

0.5.5

Works with Cytoscape 3.1

Release Notes

removed target arrow type (because KGML does NOT have edge direction info)

0.5.4

Works with Cytoscape 3.1

Release Notes

fixed edge connection problem

0.5.3

Works with Cytoscape 3.1


0.5.2

Works with Cytoscape 3.1

Release Notes

fixed import 01110 "Biosynthesis of secondary metabolites"

0.5.1

Works with Cytoscape 3.1

Release Notes

removed unfinished GUI menu from menubar

0.5.0

Works with Cytoscape 3.1

Release Notes

initial release

CYTOSCAPE 3

Version 0.8.0

License Click here

Released 3 Apr 2018

Works with Cytoscape 3.6

Download Stats Click here