GNC

Gene Network Coherence with direct and indirect relationships
# GNC: Gene Network Coherence with direct and indirect relationships GNC is a Cytoscape app designed to analyze gene networks coherence using direct and indirect relationships. ## Using GNC First you need to install the app throug the app manager. If everything goes well, you will get a new item in the `Apps` menu called `GNC`. GNC consider your current selected network as the network to analyzed so you need to have a network or a network view open in Cytoscape. Open GNC from the `Apps` menu and you'll be presented the configuration dialog. Select one of the preloaded databases or load your own custom biological databases which must be a “.txt” file formatted as: Node1,Node2 Node1,Node3 ... Node1,Node N ... Node N, Node M Sit back and be patient. Although this program is optimized, usually it takes a long time, specially if you use files bigger than 1 MB. Make sure to give enough memory to the Java Virtual Machine (at least 2048MB). ## Reference Gómez-Vela, Francisco, José Antonio Lagares, and Norberto Díaz-Díaz. "Gene network coherence based on prior knowledge using direct and indirect relationships." Computational biology and chemistry 56 (2015): 142-151. Copyright © 2016 Universidad Pablo de Olavide, Spain.

1.0.0

Works with Cytoscape 3.0


CYTOSCAPE 3

Version 1.0.0

Released 6 Oct 2016

Works with Cytoscape 3.0

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CYTOSCAPE 2

Version None

Released 6 Oct 2016

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