GFD-Net

Analyze a gene network based on Gene Ontology (GO) and calculate a quantitative measure of its functional dissimilarity
Categories: ontology analysis
<h3>What is GFD-Net</h3><p>GFD-Net is a Cytoscape app designed to visualize and analyze the functional dissimilarity of gene networks. GFD-Net can analyze a gene network based on Gene Ontology (GO) and calculate a quantitative measure of its functional dissimilarity, i.e. a quantitative value of the degree of dissimilarity between the connected genes in it.</p><h3>What else</h3><p>After the analysis, users can visualize the information retrieved from GO.</p><ul><li>For each gene the user can see its associated GO terms and its function (specified by a GO term) chosen as the most cohesive function in the set.</li><li>For each edge the user can see the genes at its ends, the function chosen as the most cohesive function in the set for each one and the dissimilarity between them.</li></ul>

1.4.1

Works with Cytoscape 3.0

Release Notes

Fix error if unknown or unannotated genes are present in the network.

1.4.0

Works with Cytoscape 3.0

Release Notes

Minor bug fixes

1.3.0

Works with Cytoscape 3.0

Release Notes

UI and algorithm refactor

1.2

Works with Cytoscape 3.0

Release Notes

Ported from Simple to Bundle app and great improvement in performance.

1.1

Works with Cytoscape 3.0


1.0

Works with Cytoscape 3.0

Release Notes

Added the app for Cytoscape 3

CYTOSCAPE 3

Version 1.4.1

Released 17 Jan 2017

Works with Cytoscape 3.0

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CYTOSCAPE 2

Version 1.0

Released 25 May 2013

Works with Cytoscape 2.3,2.4,2.5,2.6,2.7,2.8

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