dot-app

Import/export of Graphviz files in Cytoscape
# Graphviz import/export in Cytoscape Plugin that allows Cytoscape to import and export Graphviz .dot or .gv files through the import/export network menus. Can export graphs with visual information, or only with node and edge declarations. ## Directions ### Import * Navigate to File->Import->Network->File, or click this: ![](http://chianti.ucsd.edu/dot-documents/import_button.png) ### Export * With visual information (like colors, node locations, labels etc.): + Navigate to File->Export->Network and View or click this button: ![](http://chianti.ucsd.edu/dot-documents/export_button.png) * Without visual information: + Navigate to File->Export->Network and View ## Unsupported features ### Import * Subgraphs * Any HTML * Parallel edges and multicolored edges made with color lists * Network background gradients ### Export * Custom graphics * Edge bends * Arrowhead colors * Some edge line types, arrow shapes, and node shapes * Annotations * Node group data ## Detailed documentation * [Conversion details](http://chianti.ucsd.edu/dot-documents/conversion_details.pdf) * [User guide](http://chianti.ucsd.edu/dot-documents/user_guide.pdf) * [.dot style guide and example file](http://chianti.ucsd.edu/dot-documents/style_guide.pdf) ## All feedback is appreciated, contact: * Braxton Fitts -- bfitts@ucsd.edu * Massoud Maher -- mahermassoud@gmail.com * Sean Zhang -- ziz025@ucsd.edu

0.9.3

Works with Cytoscape 3.2

Release Notes

*Hotfix for release 0.9.2* * Fixed a bug which caused not all the decimal numbers to be formatted correctly by the 0.9.2 bug fix

0.9.2

Works with Cytoscape 3.2

Release Notes

* Fixed a bug which caused decimal numbers to format incorrectly in the output file for users from certain countries. Bug discovered by Pier Luigi Pau

0.9.1

Works with Cytoscape 3.2

Release Notes

* Added support for importing gradients * Special node shapes like "mdiamond" import as their base shape, so "mdiamond" imports a diamond * Changed logging so all logging is into the standard Cytoscape log files * Bug fixes

0.9.0

Works with Cytoscape 3.2


CYTOSCAPE 3

Version 0.9.3

Released 24 Feb 2016

Works with Cytoscape 3.2

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