DisGeNET-app

The App is designed to visualize, query and analyse a network representation of DisGeNET data
The DisGeNET Cytoscape App is designed to visualize, query and analyse a network representation of the gene, and variant-disease associations in DisGeNET. The DisGeNET Cytoscape App uses the current version (7.0) of the DisGeNET data. In the App, gene-disease, and variant-disease networks can be easily generated. The App assists the user in the interpretation and exploration of the genetic underpinnings of human complex diseases by a variety of built-in functions. Using the DisGeNET Cytoscape App you can perform queries restricted to (i) the original data source (ii) the association type (iii) the disorder class of interest (iv) a range of score (v) a range of evidence index (vi) an evidence level (vii) specific diseases, genes, or variants, or combinations of them (viii) lists of diseases, genes, or variants, or combinations of them The app also allows: <p> 1. Colouring nodes by disease class <p> 2. Accessing the data via REST <p> 3. Expanding node information by data source <p> 4. Easy annotation of external protein, and variant networks with diseases <p> 5. Disease enrichment analysis in protein networks, and variant networks

7.2.6

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

Fixed exceptions

7.2.5

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

fixed minor bugs

7.2.4

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

Parameters of the enrichment panel in agreement with DisGeNET REST API enrichment

7.2.3

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

Removed gene and disease projections Solved bug with enrichment analysis

7.2.2

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

fixed bug with edges of the enrichment

7.2.1

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

Fixed bugs with enrichment p values

7.2.0

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

We have added disease enrichment for variant and gene networks to the endpoints of the Cytoscape REST API

7.1.1

Works with Cytoscape 3.6

API   pom.xml   Javadocs


7.1.0

Works with Cytoscape 3.6

API   pom.xml   Javadocs


7.0.0

Works with Cytoscape 3.6

API   pom.xml   Javadocs


6.3.2

Works with Cytoscape 3.6


6.3.1

Works with Cytoscape 3.6

API   pom.xml   Javadocs


6.3.0

Works with Cytoscape 3.6


6.2.2

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

ClinVar, GWAS catalog and GWASdb have been added as gene-disease network sources

6.2.1

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

new filters have been added to the external network annotation menu Fixed minor bug in the evidence level filter in the external network annotation menu

6.2.0

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

added possibility of changing database location implemented new filters for expand function and for annotating external networks

6.0.3

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

Fixed bug in search with wild card character in gene box in VDAs tab Fixed bug in filter by association type in VDAs tab

6.0.2

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

Fixed expand gene function

6.0.1

Works with Cytoscape 3.6

API   pom.xml   Javadocs


6.0.0

Works with Cytoscape 3.6

API   pom.xml   Javadocs


5.4.0

Works with Cytoscape 3.6

API   pom.xml   Javadocs


5.3

Works with Cytoscape 3.6

API   pom.xml   Javadocs


5.2

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

Automation added

5.1

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

Corrected bugs Added utilities to explore variant-disease associations

5.0

Works with Cytoscape 3.2

API   pom.xml   Javadocs


1.0

Works with Cytoscape 3.2

API   pom.xml   Javadocs