CytoCopteR

A Cytoscape plug-in for training logic models, based on CellNOptR
<http://www.cellnopt.org> Based on prior knowledge networks CellNOptR can derive functional information about the network using logic modeling. **CytoCopteR** is a friendly way to use CellNOptR taking advantage of the network visualization and analysis of Cytoscape and without requiring knowledge on R. [http://www.biomedcentral.com/content/pdf/1752-0509-6-133.pdf Terfve, C., Cokelaer, T., Henriques, D., MacNamara, A., Gonçalves, E., Morris, M. K., et al. (2012). CellNOptR: a flexible toolkit to train protein signaling networks to data using multiple logic formalisms. BMC Systems Biology, 6, 133. doi:10.1186/1752-0509-6-133]

2.0.0

Works with Cytoscape 3.1

API   pom.xml   Javadocs


CYTOSCAPE 3

Version 2.0.0

Released 8 May 2014

Works with Cytoscape 3.1

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CYTOSCAPE 2

Version 1.2

Released 1 Aug 2013

Works with Cytoscape 2.8.3

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