Cyrface

Bridging Cytoscape with R
**Cyrface - [http://www.ebi.ac.uk/saezrodriguez/cyrface/ webpage]** **Cyrface** establishes an interface between **R** and **Cytoscape** by using different Java-R libraries, e.g. Rserve, RCaller. Cyrface can be used as a Cytoscape plug-in, e.g. to run R commands within Cytoscape, or used as a library to allow your plug-in to connect to R. ### Related Packages, Apps and Modules Note that **Cyrface** works with **Cytoscape v2**. There is no **Cytoscape v3** app that allows callouts to **R** libraries. However, the [cyREST app](http://apps.cytoscape.org/apps/cyrest) does allow **R** applications (e.g., RStudio) to invoke **Cytoscape v3** services via the [RCy3 package](http://www.bioconductor.org/packages/release/bioc/html/RCy3.html). Separately, the [RCyjs package](http://www.bioconductor.org/packages/release/bioc/html/RCyjs.html) can be used to display Cytoscape-like graphs in a web browser from within an R session.

2.0.0

Works with Cytoscape 3.1

API   pom.xml   Javadocs


CYTOSCAPE 3

Version 2.0.0

Released 8 May 2014

Works with Cytoscape 3.1

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CYTOSCAPE 2

Version 1.0

Released 1 Aug 2013

Works with Cytoscape 2.8

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