CyCommunityDetection

Integrates multiscale community detection and functional enrichment for network analysis. CDAPS
CyCommunityDetection, the Cytoscape App component of Community Detection APplication and Service (CDAPS), performs multiscale community detection and functional enrichment for network analysis through a service-oriented architecture. These features are provided by integrating popular community detection algorithms and enrichment tools. All the algorithms and tools run remotely on a dedicated server. Currently supported features: * Community detection algorithms: Louvain, Infomap, OSLOM, CliXO, HiDeF * Functional enrichment tools: g:Profiler, Enrichr, iQuery **If you use CyCommunityDetection in your research please cite:** Singhal A, Cao S, Churas C, Pratt D, Fortunato S, Zheng F, et al. (2020) Multiscale community detection in Cytoscape. PLoS Comput Biol 16(10): e1008239. https://doi.org/10.1371/journal.pcbi.1008239

1.12.0

Works with Cytoscape 3.7

Release Notes

* Added new menu option `Apps -> Community Detection -> Tally Attributes in Hierarchy` that annotates the hierarchy network by adding columns using values tallied from a set of attributes/columns in the parent network. * Order of algorithms displayed in **Run Community Detection** and **Run Functional Enrichment** dialogs are now consistent with what is returned from CDAPS REST server. UD-1573

1.11.0

Works with Cytoscape 3.7

Release Notes

* Added support for new edge list format COMMUNITYDETECTRESULTV2 allowing Community Detection algorithms to add additional custom node columns. UD-1091 Bug fixes * Fixed bug where `View Interactions for Selected Node` no longer worked if a session was reloaded. UD-1087 * Fixed bug where any values set in the community detection or functional enrichment dialogs were lost when when reopening those dialogs. [https://github.com/cytoscape/cy-community-detection/issues/3 Issue 3]

1.10.0

Works with Cytoscape 3.7

Release Notes

* Added new menu option `App -> Community Detection -> Settings` that lets caller easily change CDAPS REST server. UD-1066 * Added message letting user know using weight column in Community Detection dialog is an advanced parameter. UD-988 * In Community Detection dialog replaced **About** button with info icon next to algorithm selection dropdown. UD-987 Bug fixes * Fixed bug where changes to properties under `Edit -> Properties -> CyCommunityDetection` were not being loaded. UD-986

1.0

Works with Cytoscape 3.7


CYTOSCAPE 3

Version 1.12.0

Released 21 Jan 2021

Works with Cytoscape 3.7

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