cddApp

Integration between Cytoscape the the NCBI Conserved Domain Database
*cddApp* is a Cytoscape3 extension that supports the annotation of protein networks with information about domains and specific functional sites (features) from the National Center for Biotechnology Information (NCBI) Conserved Domain Database (CDD). CDD information is loaded for nodes annotated with GI numbers or UniProt Identifiers and (optionally) PDB structures. *cddApp* integrates with the Cytoscape apps [http://apps.cytoscape.org/apps/structureViz2 *structureViz2*] and [http://apps.cytoscape.org/apps/enhancedGraphics enhancedGraphics]. Together, these three apps provide powerful tools to annotate nodes with CDD domain and site information and visualize that information in both network and structural contexts.

1.1.4

Works with Cytoscape 3.1

Release Notes

Updated to support automatically exposing the results panel.

1.1.2

Works with Cytoscape 3.1

Release Notes

Fixed bug that caused results panel not to update correctly when the node selection was changed.

1.1.0

Works with Cytoscape 3.1

Release Notes

Added support for domain architecture diagrams

1.0.1

Works with Cytoscape 3.1

Release Notes

Fixed bug with handling of selection where selected edges resulted in null entries in the results panel.

1.0.0

Works with Cytoscape 3.1