bioCycPlugin

Loads any pathway in bioCyc database. Original panel provides useful information for each node.
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This app provides a web services interface to Pathway Tools repositories. It utilizes the web services infrastructure in Cytoscape to access web services using [Pathway Tools](http://bioinformatics.ai.sri.com/ptools/) version 14.5 or better. **Features:** * The app allows users to select the site they want to use (the [BioCyc repostory](http://www.biocyc.org/) is the default). * The app provides the user with a list of databases to choose from. The user may search the database by entering the name of a pathway, protein, or compound. * Double-clicking on the desired pathway will load it into Cytoscape using the [BioPAX](http://www.biopax.org/) format. * As part of the load process, the SMILES strings for any small molecules with structures are pulled out of the CML and put into a "smiles" cytoscape attribute to provide compatability with chemViz.
CYTOSCAPE 2

Version 0.9

Released 17 Dec 2010

Works with Cytoscape 2.8

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