autoHGPEC

An upgrading version of HGPEC with added automation features to predict novel disease-gene and disease-disease associations
Identification of novel disease-gene and disease-disease associations is an important task in biomedical research. Recently, we have developed a Cytoscape app, namely HGPEC, using a state-of-the-art network-based method for such task. Here, we describe an upgrading version of HGPEC, namely autoHGPEC, with added automation features. By adding these functions, autoHGPEC can be used as a component of other complex analysis pipelines as well as make use of other data resources. We demonstrated the use of autoHGPEC by predicting novel breast cancer-associated genes and diseases. Further investigation by visualizing and collecting evidences for associations between top 20 ranked genes/diseases and breast cancer has shown the ability of autoHGPEC.

1.2

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

Fix some minor bugs

1.1

Works with Cytoscape 3.6

Release Notes

Adding some CyREST APIs

1.0

Works with Cytoscape 3.6

API   pom.xml   Javadocs


CYTOSCAPE 3

Version 1.2

Released 17 May 2018

Works with Cytoscape 3.6

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