AutoAnnotate

Finds clusters and visually annotates them with labels and groups.
Finds clusters and visually annotates them with labels and groups. These visualizations provide a concise visual summary which is helpful for network analysis and interpretation. Features: * Automates running clusterMaker2 to generate clusters. (Or provide your own clusters by selecting any discrete node attribute.) * Automatically generates cluster labels based on word frequencies of selected attributes. * Manages multiple “Annotation Sets” and easily switches between them. * Change the look of the annotations using several display options. * Automatically group and collapse clusters. Creates a simplified view by collapsing each cluster into a “meta-node” and collapsing edges between clusters into a single “meta-edge”. * Allows to manually create and update clusters. * Originally designed and used to annotate Enrichment Maps but applicable to any type of network including PPI, pathways, or Social networks. Links: * [http://baderlab.org/Software/AutoAnnotate/UserManual User Guide] * [http://f1000research.com/articles/5-1717/v1 F1000 Research Software Tool Article] * [https://zenodo.org/badge/latestdoi/22805/BaderLab/AutoAnnotateApp DOI] * [https://github.com/BaderLab/AutoAnnotateApp Code Repository]

1.2

Works with Cytoscape 3.4

Release Notes

* Quick start for new users. * Streamlined display options panel. * Ability to change annotation colors. * Support for hidden nodes. * Option to create clusters for singleton nodes. * New commands for automating AutoAnnotate from CyREST. * Fixes for flickering annotations and performance issues.

1.1.0

Works with Cytoscape 3.3

Release Notes

* Added "Create Summary Network" feature because it is much faster than "Collapse All". * Added status bar to cluster panel. * Added "Display Creation Paramters..." feature. * Changed the look of the checkmarks in the "collapsed" column. * Bug fixes.

1.0.1

Works with Cytoscape 3.3

Release Notes

Bug-fix release that allows AutoAnnotate to work properly with Cytoscape 3.4.

1.0.0

Works with Cytoscape 3.3

Apps that depend on this release


CYTOSCAPE 3

Version 1.2

License Click here

Released 5 Sep 2017

Works with Cytoscape 3.4

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