com.dpgil.pathlinker.path_linker.internal.task

Class RunKSPTask

java.lang.Object

org.cytoscape.work.AbstractTask

org.cytoscape.task.AbstractNetworkTask

com.dpgil.pathlinker.path_linker.internal.task.RunKSPTask

All Implemented Interfaces:

org.cytoscape.work.ObservableTask, org.cytoscape.work.Task

public class RunKSPTask
extends org.cytoscape.task.AbstractNetworkTask
implements org.cytoscape.work.ObservableTask

Class which creates a task that runs the KSP algorithm

Field Summary

Fields inherited from class org.cytoscape.work.AbstractTask

cancelled

Constructor Summary

Constructors

Constructor and Description
RunKSPTask(org.cytoscape.model.CyNetwork network, PathLinkerModelParams modelParams) Default constructor

Method Summary

Modifier and Type	Method and Description
<R> R	getResults(Class<? extends R> type) Get Result method returns PathLinkerModel used by the RunKSPTask the model consist of error lists and results from running the ksp algorithm
void	run(org.cytoscape.work.TaskMonitor taskMonitor) Runs the KSP algorithm

Methods inherited from class org.cytoscape.work.AbstractTask

cancel, getTaskIterator, insertTasksAfterCurrentTask, insertTasksAfterCurrentTask, setTaskIterator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.cytoscape.work.ObservableTask

getResultClasses

Methods inherited from interface org.cytoscape.work.Task

cancel

Constructor Detail

RunKSPTask

public RunKSPTask(org.cytoscape.model.CyNetwork network,
                  PathLinkerModelParams modelParams)

Default constructor

Parameters:

network - network to perform ksp algorithm

modelParams - parameters to create model for running the ksp algorithm

Method Detail

getResults

public <R> R getResults(Class<? extends R> type)

Get Result method returns PathLinkerModel used by the RunKSPTask the model consist of error lists and results from running the ksp algorithm

Specified by:

getResults in interface org.cytoscape.work.ObservableTask

Returns:

object based on user input type otherwise null

run

public void run(org.cytoscape.work.TaskMonitor taskMonitor)

Runs the KSP algorithm

Specified by:

run in interface org.cytoscape.work.Task

Specified by:

run in class org.cytoscape.work.AbstractTask