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C

CLLayout - Class in org.cytoscape.opencl.layout

CLLayout(UndoSupport) - Constructor for class org.cytoscape.opencl.layout.CLLayout

CLLayoutContext - Class in org.cytoscape.opencl.layout

CLLayoutContext() - Constructor for class org.cytoscape.opencl.layout.CLLayoutContext

CLLayoutTask - Class in org.cytoscape.opencl.layout

This class implements the Prefuse force-directed layout algorithm using OpenCL.

CLLayoutTask(String, CyNetworkView, Set<View<CyNode>>, CLLayoutContext, String, UndoSupport) - Constructor for class org.cytoscape.opencl.layout.CLLayoutTask

Creates a new ForceDirectedLayout object.

createLayoutContext() - Method in class org.cytoscape.opencl.layout.CLLayout

createTaskIterator(CyNetworkView, Object, Set<View<CyNode>>, String) - Method in class org.cytoscape.opencl.layout.CLLayout

CyActivator - Class in org.cytoscape.opencl.layout

CyActivator() - Constructor for class org.cytoscape.opencl.layout.CyActivator

D

defaultNodeMass - Variable in class org.cytoscape.opencl.layout.CLLayoutContext

defaultSpringCoefficient - Variable in class org.cytoscape.opencl.layout.CLLayoutContext

defaultSpringLength - Variable in class org.cytoscape.opencl.layout.CLLayoutContext

E

edgeCoeffs - Variable in class org.cytoscape.opencl.layout.SlimNetwork

edgeLengths - Variable in class org.cytoscape.opencl.layout.SlimNetwork

edgeMassEnd - Variable in class org.cytoscape.opencl.layout.SlimNetwork

edgeMassStart - Variable in class org.cytoscape.opencl.layout.SlimNetwork

edges - Variable in class org.cytoscape.opencl.layout.SlimNetwork

edgeUniqueSources - Variable in class org.cytoscape.opencl.layout.SlimNetwork

edgeUniqueTargets - Variable in class org.cytoscape.opencl.layout.SlimNetwork

edgeWeighter - Variable in class org.cytoscape.opencl.layout.CLLayoutContext

F

fromScratch - Variable in class org.cytoscape.opencl.layout.CLLayoutContext

G

getSupportedEdgeAttributeTypes() - Method in class org.cytoscape.opencl.layout.CLLayout

getSupportsSelectedOnly() - Method in class org.cytoscape.opencl.layout.CLLayout

getValidationState(Appendable) - Method in class org.cytoscape.opencl.layout.CLLayoutContext

H

height - Variable in class org.cytoscape.opencl.layout.SlimNetwork

I

isDeterministic - Variable in class org.cytoscape.opencl.layout.CLLayoutContext

L

layoutPartition(LayoutPartition) - Method in class org.cytoscape.opencl.layout.CLLayoutTask

left - Variable in class org.cytoscape.opencl.layout.SlimNetwork

M

massCenterX - Variable in class org.cytoscape.opencl.layout.SlimNetwork

massCenterY - Variable in class org.cytoscape.opencl.layout.SlimNetwork

N

nodePosX - Variable in class org.cytoscape.opencl.layout.SlimNetwork

nodePosY - Variable in class org.cytoscape.opencl.layout.SlimNetwork

nodeToIndex - Variable in class org.cytoscape.opencl.layout.SlimNetwork

numEdgesSparse - Variable in class org.cytoscape.opencl.layout.SlimNetwork

numEdgesUnique - Variable in class org.cytoscape.opencl.layout.SlimNetwork

numEdgesUniquePadded - Variable in class org.cytoscape.opencl.layout.SlimNetwork

numIterations - Variable in class org.cytoscape.opencl.layout.CLLayoutContext

numIterationsEdgeRepulsive - Variable in class org.cytoscape.opencl.layout.CLLayoutContext

numNodes - Variable in class org.cytoscape.opencl.layout.SlimNetwork

numNodesPadded - Variable in class org.cytoscape.opencl.layout.SlimNetwork

O

offset(float, float) - Method in class org.cytoscape.opencl.layout.SlimNetwork

org.cytoscape.opencl.layout - package org.cytoscape.opencl.layout

S

singlePartition - Variable in class org.cytoscape.opencl.layout.CLLayoutContext

SlimNetwork - Class in org.cytoscape.opencl.layout

SlimNetwork(LayoutPartition, Boolean, float, float, float, EdgeWeighter, int) - Constructor for class org.cytoscape.opencl.layout.SlimNetwork

start(BundleContext) - Method in class org.cytoscape.opencl.layout.CyActivator

T

top - Variable in class org.cytoscape.opencl.layout.SlimNetwork

toString() - Method in class org.cytoscape.opencl.layout.CLLayoutTask

U

updateMetrics() - Method in class org.cytoscape.opencl.layout.SlimNetwork

W

width - Variable in class org.cytoscape.opencl.layout.SlimNetwork

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