# All Classes and Interfaces

Class
Description
AboutMenuAction
Creates a new menu item under Apps menu section.
AbstractEnrichmentTask
Activator
AnnotateDiseasesGenesTaskFactory
AnnotateDiseasesTask
AnnotateDiseasesVariantsTaskFactory
AnnotateGenesTask
AnnotateGenesTaskFactory
AnnotateVariantsTask
AnnotateVariantsTaskFactory
AnnotationService
ApiClient
ApiKeyDialog
ApplyCustomLayoutTaskFactory
Applies CustomLayout to the given CyNetworkView with specific Tunable parameters.
AutomationGeneEnrichmentTask
AutomationParams
AutomationVariantEnrichmentTask
AutoSuggestor
ChangeDBMenuAction
Creates a new menu item under Apps menu section.
ColorAction
listener for the disease color button which calls the function to color nodes according to their disease classes and puts a legend into the results panel if it is not already there
ColorTable
This class provides utility methods for creating and managing color tables in Cytoscape networks.
CustomChartListener
This class manages the addition and removal of custom chart factories in Cytoscape.
CustomLayout
CustomLayoutContext
CyActivator
Database
DatabaseImpl
DatabaseManager
The DISGENET Cytoscape App is designed to visualize, query, and analyze a network representation of DISGENET data.
DatabaseManagerImpl
DatabaseProps
The DISGENET Cytoscape App is designed to visualize, query, and analyze a network representation of DISGENET data.
DisColorLegendPanel
DiseaseColourMapping
simple function to map the color codes to the corresponding colours and names
DiseaseProjParams
DisGeNetCyTableBase
Class that loads all the data for the table networks.
DisGeNetCyTableDisease
Class to manage all the parameters relative to the diseases attributes of the cytoscape table.
DisGeNetCyTableGene
Class to manage all the parameters relative to the gene attributes of the cytoscape table.
DisGeNETCyTableNodeInterface
DisGeNetCyTableVariant
Class to manage all the parameters relative to the gene attributes of the cytoscape table.
DisGeNETCytoPanel
DisGeNetException
The DISGENET Cytoscape App is designed to visualize, query, and analyze a network representation of DISGENET data.
DisGenetStyleManager
The DISGENET Cytoscape App is designed to visualize, query, and analyze a network representation of DISGENET data.
EnrichmentCytoPanel
EnrichmentNetworkListener
EnrichmentService
EnrichmentTable
EnrichmentTableModel
EnrichmentTaskObserver
ExpandCurrentNetActionTaskFactory
ExpandCurrentNetworkTask
ExpandNewNetActionTaskFactory
ExpandNewNetworkTask
Task class to create a new network with the selected nodes from a previous task.
ExternalNetworksMenu
FilterEnrichmentTask
GeneDiseaseParams
GeneEnrichment
GeneEnrichmentParams
GeneEnrichmentTask
GeneEnrichmentTaskFactory
GeneProjParams
GeneSearchField
GuiParameters<PostTranslational_Modification,Altered_Expression>
The DISGENET Cytoscape App is designed to visualize, query, and analyze a network representation of DISGENET data.
GuiProps
The DISGENET Cytoscape App is designed to visualize, query, and analyze a network representation of DISGENET data.
HelperFunctions
The DISGENET Cytoscape App is designed to visualize, query, and analyze a network representation of DISGENET data.
IconUtils
JsonParser
LinkoutDiseaseTask
LinkoutDiseaseTaskFactory
LinkoutEdgeTask
LinkoutEdgeTaskFactory
LinkoutGeneTask
LinkoutGeneTaskFactory
LinkoutNodeTask
LinkoutProperties
LinkoutService
LinkoutVariantTask
LinkoutVariantTaskFactory
MainPanel
This class generates the main gui panel with the options and buttons that call the functions to create networks, colour nodes,...
MemComboBox
MenuAction
Creates a new menu item under Apps menu section.
NetAction
Class to handle the clicking of the create network Button
NetCompletionChangeEvent
part of event handler class to allow updating the progress bar from different task
NetCreationEvent
part of event handler class to allow updating the progress bar from different task
NetCreationListener
part of event handler class to allow updating the progress bar from different task
NetTask
NetTaskAutomation
NetTaskObserver
NetworkAutomation
NetworkAutomationImpl
NetworkBuilder
NetworkValidation
NodeValidation
The DISGENET Cytoscape App is designed to visualize, query, and analyze a network representation of DISGENET data.
OperationResult
ParametersValidation
RemoveColorAction
SearchDictionaries
The DISGENET Cytoscape App is designed to visualize, query, and analyze a network representation of DISGENET data.
SearchField
ShowEnrichmentPanelTask
ShowEnrichmentPanelTaskFactory
ShowGenesVariantTask
Class that handles the display of gene nodes in networks containing variants.
StartDisGeNETMenuAction
Creates a new menu item under Apps menu section.
Status
Test
TextIcon
UserTypeUtil
VariantDiseaseParams
VariantEnrichmentParams
VariantEnrichmentService
VariantEnrichmentTask
VariantEnrichmentTaskFactory
VariantSearchField
WebMenuAction
Creates a new menu item under Apps menu section.