Package es.imim.DISGENET.internal.enrichment

Class VariantEnrichmentTask

java.lang.Object

org.cytoscape.work.AbstractTask

es.imim.DISGENET.internal.enrichment.AbstractEnrichmentTask

es.imim.DISGENET.internal.enrichment.VariantEnrichmentTask

All Implemented Interfaces:

org.cytoscape.work.Task

public class VariantEnrichmentTask
extends AbstractEnrichmentTask

Field Summary

Fields

Modifier and Type	Field	Description
org.cytoscape.work.util.ListSingleSelection<Callable<org.cytoscape.model.CyColumn>>	columnNames
Integer	minNumVariants
boolean	newNetwork
double	pvalueThreshold
org.cytoscape.work.util.ListSingleSelection<String>	sources
org.cytoscape.work.util.ListSingleSelection<String>	typeId

Fields inherited from class org.cytoscape.work.AbstractTask

cancelled

Constructor Summary

Constructors

Constructor	Description
VariantEnrichmentTask(org.cytoscape.view.model.CyNetworkView cyNetworkView)

Method Summary

Modifier and Type	Method	Description
void	run(org.cytoscape.work.TaskMonitor taskMonitor)

Methods inherited from class es.imim.DISGENET.internal.enrichment.AbstractEnrichmentTask

getConn, getCurrNetwork, getEnrichList, listNodeColumnsNames, main, openConnection, setUrlParams

Methods inherited from class org.cytoscape.work.AbstractTask

cancel, getTaskIterator, insertTasksAfterCurrentTask, insertTasksAfterCurrentTask, setTaskIterator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

columnNames

public org.cytoscape.work.util.ListSingleSelection<Callable<org.cytoscape.model.CyColumn>> columnNames

sources

public org.cytoscape.work.util.ListSingleSelection<String> sources

typeId

public org.cytoscape.work.util.ListSingleSelection<String> typeId

newNetwork

public boolean newNetwork

pvalueThreshold

public double pvalueThreshold

minNumVariants

public Integer minNumVariants

Constructor Details

VariantEnrichmentTask

public VariantEnrichmentTask(org.cytoscape.view.model.CyNetworkView cyNetworkView)

Method Details

run

public void run(org.cytoscape.work.TaskMonitor taskMonitor)
         throws Exception

Specified by:

run in interface org.cytoscape.work.Task

Overrides:

run in class AbstractEnrichmentTask

Throws:

Exception